View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19726_low_54 (Length: 266)

Name: NF19726_low_54
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19726_low_54
NF19726_low_54
[»] chr2 (41 HSPs)
chr2 (39-246)||(38945773-38945980)
chr2 (39-222)||(18003102-18003284)
chr2 (39-222)||(41560065-41560248)
chr2 (39-222)||(10624295-10624477)
chr2 (39-222)||(213282-213464)
chr2 (9-246)||(3803367-3803605)
chr2 (113-246)||(20950975-20951108)
chr2 (39-246)||(1100908-1101114)
chr2 (39-222)||(27276205-27276386)
chr2 (113-222)||(5334623-5334730)
chr2 (39-222)||(7263078-7263262)
chr2 (39-218)||(39794028-39794207)
chr2 (39-180)||(24749751-24749894)
chr2 (39-100)||(5335043-5335104)
chr2 (113-222)||(41183128-41183236)
chr2 (39-219)||(24607407-24607588)
chr2 (9-246)||(1149483-1149735)
chr2 (39-222)||(41008756-41008940)
chr2 (39-222)||(435403-435587)
chr2 (39-94)||(9651355-9651410)
chr2 (39-94)||(43950073-43950128)
chr2 (39-94)||(41053397-41053452)
chr2 (51-94)||(34921611-34921654)
chr2 (39-90)||(19187051-19187102)
chr2 (40-87)||(45475609-45475656)
chr2 (204-246)||(1096606-1096648)
chr2 (204-245)||(3795349-3795390)
chr2 (204-244)||(27276394-27276434)
chr2 (158-222)||(45475501-45475565)
chr2 (143-222)||(41053501-41053580)
chr2 (39-90)||(12908256-12908309)
chr2 (144-222)||(43950178-43950256)
chr2 (158-222)||(19187171-19187235)
chr2 (204-247)||(25964821-25964864)
chr2 (48-90)||(23001032-23001074)
chr2 (204-246)||(24754044-24754086)
chr2 (165-222)||(12908384-12908441)
chr2 (204-245)||(25184850-25184890)
chr2 (39-90)||(34910127-34910179)
chr2 (158-222)||(34921707-34921771)
chr2 (66-94)||(41183079-41183107)
[»] chr7 (19 HSPs)
chr7 (39-246)||(618580-618787)
chr7 (39-222)||(43033035-43033217)
chr7 (39-222)||(18105434-18105617)
chr7 (39-219)||(30786589-30786768)
chr7 (39-222)||(45763441-45763623)
chr7 (41-222)||(43623978-43624157)
chr7 (39-246)||(29593184-29593390)
chr7 (39-231)||(47741790-47741981)
chr7 (9-222)||(42499470-42499684)
chr7 (39-94)||(10708110-10708165)
chr7 (39-94)||(47061116-47061171)
chr7 (39-96)||(36185981-36186038)
chr7 (49-94)||(15059793-15059838)
chr7 (144-222)||(47060987-47061065)
chr7 (204-246)||(42499420-42499462)
chr7 (204-246)||(5537883-5537925)
chr7 (204-246)||(36186493-36186534)
chr7 (205-246)||(27453615-27453656)
chr7 (200-245)||(45361661-45361706)
[»] scaffold0260 (1 HSPs)
scaffold0260 (39-247)||(11790-11997)
[»] chr1 (55 HSPs)
chr1 (39-247)||(20349467-20349674)
chr1 (9-246)||(41453849-41454084)
chr1 (9-246)||(29356492-29356727)
chr1 (42-222)||(15047343-15047522)
chr1 (39-247)||(44465606-44465812)
chr1 (39-222)||(31945691-31945873)
chr1 (41-247)||(23913867-23914071)
chr1 (39-222)||(3948292-3948474)
chr1 (39-222)||(38775956-38776138)
chr1 (39-222)||(3983148-3983330)
chr1 (9-240)||(5077958-5078190)
chr1 (39-246)||(30905782-30905989)
chr1 (39-224)||(22397853-22398038)
chr1 (39-222)||(6561990-6562173)
chr1 (39-223)||(37014951-37015136)
chr1 (9-222)||(50117574-50117789)
chr1 (9-224)||(44620915-44621131)
chr1 (113-222)||(9711555-9711663)
chr1 (39-201)||(13629473-13629637)
chr1 (143-222)||(8460030-8460109)
chr1 (41-94)||(1654934-1654987)
chr1 (39-96)||(46973389-46973446)
chr1 (47-94)||(22345447-22345494)
chr1 (144-224)||(1654803-1654883)
chr1 (158-246)||(4516042-4516130)
chr1 (42-94)||(8459931-8459983)
chr1 (39-90)||(4516197-4516248)
chr1 (39-90)||(13174030-13174081)
chr1 (144-222)||(46973264-46973341)
chr1 (39-82)||(19498940-19498983)
chr1 (47-90)||(21944214-21944257)
chr1 (39-94)||(36076390-36076445)
chr1 (144-222)||(19054184-19054262)
chr1 (204-246)||(44470031-44470073)
chr1 (204-246)||(52802141-52802183)
chr1 (205-246)||(6562182-6562223)
chr1 (204-245)||(30910023-30910064)
chr1 (206-246)||(15047293-15047333)
chr1 (203-246)||(6557926-6557969)
chr1 (157-224)||(13173894-13173961)
chr1 (158-221)||(19499060-19499123)
chr1 (204-246)||(9711671-9711713)
chr1 (204-246)||(23359369-23359411)
chr1 (204-245)||(29352271-29352312)
chr1 (158-222)||(7981087-7981151)
chr1 (204-244)||(51289980-51290020)
chr1 (204-235)||(29765549-29765580)
chr1 (160-222)||(22345321-22345383)
chr1 (204-246)||(22346037-22346078)
chr1 (205-247)||(51288897-51288939)
chr1 (204-245)||(44336261-44336302)
chr1 (203-247)||(8460116-8460159)
chr1 (204-244)||(11183199-11183239)
chr1 (158-218)||(36076506-36076566)
chr1 (204-248)||(36076578-36076622)
[»] chr6 (21 HSPs)
chr6 (39-246)||(18347052-18347259)
chr6 (9-222)||(28249946-28250157)
chr6 (39-222)||(1612577-1612759)
chr6 (72-222)||(13388572-13388720)
chr6 (39-193)||(2052458-2052610)
chr6 (39-222)||(31146434-31146620)
chr6 (39-220)||(7363145-7363327)
chr6 (39-94)||(18606234-18606289)
chr6 (39-90)||(26702011-26702062)
chr6 (41-91)||(7361354-7361404)
chr6 (144-220)||(18606107-18606183)
chr6 (158-230)||(23985955-23986027)
chr6 (47-90)||(24218209-24218252)
chr6 (204-246)||(28362751-28362793)
chr6 (158-225)||(13479758-13479828)
chr6 (39-90)||(2260175-2260226)
chr6 (204-246)||(31146384-31146426)
chr6 (204-246)||(2051040-2051081)
chr6 (158-224)||(16192828-16192894)
chr6 (47-88)||(23985845-23985886)
chr6 (203-240)||(31771760-31771797)
[»] chr5 (40 HSPs)
chr5 (39-246)||(37820711-37820916)
chr5 (9-246)||(13567901-13568137)
chr5 (39-244)||(7021714-7021918)
chr5 (39-246)||(27867676-27867882)
chr5 (46-224)||(14279883-14280060)
chr5 (9-222)||(34077828-34078040)
chr5 (39-218)||(28886249-28886427)
chr5 (39-222)||(25896910-25897091)
chr5 (9-222)||(1035245-1035457)
chr5 (41-222)||(28387330-28387510)
chr5 (9-205)||(34123720-34123918)
chr5 (39-204)||(38860031-38860197)
chr5 (39-222)||(11033292-11033474)
chr5 (39-222)||(7800816-7800999)
chr5 (39-222)||(4204039-4204223)
chr5 (39-218)||(31098763-31098943)
chr5 (39-100)||(33993462-33993523)
chr5 (39-90)||(18538163-18538214)
chr5 (39-90)||(34944032-34944083)
chr5 (204-246)||(27863440-27863482)
chr5 (158-222)||(18538283-18538347)
chr5 (39-90)||(21999246-21999297)
chr5 (144-222)||(33993341-33993418)
chr5 (204-246)||(34122535-34122577)
chr5 (204-246)||(28388539-28388581)
chr5 (47-89)||(30354235-30354277)
chr5 (158-203)||(21979646-21979691)
chr5 (200-235)||(8539532-8539567)
chr5 (200-235)||(11348491-11348526)
chr5 (39-90)||(20285202-20285253)
chr5 (204-246)||(25890005-25890047)
chr5 (205-247)||(25897100-25897142)
chr5 (204-246)||(39743168-39743210)
chr5 (205-246)||(1396297-1396338)
chr5 (205-246)||(28387280-28387321)
chr5 (206-243)||(30887382-30887419)
chr5 (204-245)||(34123955-34123996)
chr5 (204-241)||(41798834-41798871)
chr5 (203-235)||(8066-8098)
chr5 (205-245)||(542811-542851)
[»] chr8 (31 HSPs)
chr8 (39-222)||(7340128-7340310)
chr8 (39-224)||(30305399-30305583)
chr8 (39-222)||(32378751-32378933)
chr8 (39-222)||(32432706-32432888)
chr8 (9-247)||(31957844-31958081)
chr8 (39-190)||(8423663-8423813)
chr8 (113-246)||(45454417-45454549)
chr8 (39-245)||(41744549-41744755)
chr8 (9-206)||(35966549-35966746)
chr8 (9-222)||(1114804-1115017)
chr8 (39-222)||(2146786-2146969)
chr8 (41-246)||(39752854-39753059)
chr8 (41-223)||(43369840-43370022)
chr8 (39-94)||(43689830-43689885)
chr8 (39-100)||(20546951-20547012)
chr8 (39-94)||(18205974-18206029)
chr8 (144-222)||(18205847-18205924)
chr8 (158-222)||(4866495-4866559)
chr8 (158-222)||(22577726-22577790)
chr8 (42-89)||(22577857-22577904)
chr8 (53-100)||(45454586-45454633)
chr8 (204-245)||(39495-39536)
chr8 (39-90)||(4866627-4866678)
chr8 (204-246)||(41743901-41743943)
chr8 (205-246)||(1114754-1114795)
chr8 (204-245)||(1116208-1116249)
chr8 (143-204)||(35389587-35389648)
chr8 (204-245)||(35962319-35962360)
chr8 (204-247)||(38872950-38872993)
chr8 (204-246)||(20549252-20549294)
chr8 (204-246)||(43262432-43262474)
[»] chr4 (44 HSPs)
chr4 (39-224)||(49566305-49566489)
chr4 (39-175)||(3403908-3404043)
chr4 (9-222)||(15999597-15999811)
chr4 (39-224)||(1087893-1088079)
chr4 (9-203)||(19073453-19073649)
chr4 (39-218)||(13173299-13173476)
chr4 (39-222)||(9890055-9890239)
chr4 (39-221)||(4975827-4976009)
chr4 (9-181)||(41023485-41023659)
chr4 (39-222)||(21470964-21471146)
chr4 (39-246)||(4768689-4768896)
chr4 (39-94)||(44049287-44049342)
chr4 (195-246)||(3403858-3403909)
chr4 (143-222)||(4979850-4979929)
chr4 (39-94)||(11494732-11494787)
chr4 (39-90)||(18581161-18581212)
chr4 (158-225)||(18581280-18581347)
chr4 (39-90)||(51644328-51644379)
chr4 (158-230)||(17139651-17139723)
chr4 (39-90)||(17139797-17139848)
chr4 (39-90)||(30042635-30042686)
chr4 (39-94)||(38464598-38464653)
chr4 (204-246)||(9890005-9890047)
chr4 (204-246)||(15995733-15995775)
chr4 (204-246)||(19069198-19069240)
chr4 (39-96)||(3449908-3449965)
chr4 (149-214)||(3450019-3450084)
chr4 (143-204)||(44049177-44049238)
chr4 (165-225)||(30042509-30042568)
chr4 (39-90)||(24417247-24417298)
chr4 (158-225)||(51644447-51644514)
chr4 (144-222)||(11494604-11494682)
chr4 (203-245)||(37394260-37394302)
chr4 (200-241)||(1044535-1044576)
chr4 (205-242)||(19073676-19073713)
chr4 (204-245)||(37395211-37395252)
chr4 (205-246)||(50274771-50274812)
chr4 (200-244)||(9491275-9491319)
chr4 (47-94)||(8361863-8361910)
chr4 (203-246)||(55407812-55407855)
chr4 (204-246)||(15999819-15999861)
chr4 (162-224)||(24417370-24417431)
chr4 (205-246)||(41023397-41023438)
chr4 (204-241)||(50278818-50278855)
[»] chr3 (47 HSPs)
chr3 (39-222)||(30947483-30947665)
chr3 (39-224)||(8160825-8161009)
chr3 (9-222)||(13747520-13747731)
chr3 (48-222)||(3948790-3948963)
chr3 (39-193)||(6740951-6741106)
chr3 (39-222)||(9429677-9429861)
chr3 (39-246)||(23442961-23443168)
chr3 (42-243)||(50953316-50953519)
chr3 (39-222)||(36817352-36817533)
chr3 (9-222)||(14398596-14398806)
chr3 (39-244)||(2745059-2745265)
chr3 (39-222)||(48250698-48250881)
chr3 (39-221)||(7842843-7843028)
chr3 (39-224)||(46993060-46993244)
chr3 (42-222)||(7837656-7837836)
chr3 (39-222)||(21956033-21956217)
chr3 (39-201)||(16444677-16444841)
chr3 (39-222)||(29929487-29929670)
chr3 (39-222)||(29978641-29978824)
chr3 (143-230)||(6505909-6505997)
chr3 (39-90)||(9582690-9582741)
chr3 (39-92)||(6505805-6505858)
chr3 (204-246)||(2743409-2743451)
chr3 (204-246)||(13743304-13743346)
chr3 (204-246)||(41137729-41137771)
chr3 (204-246)||(50957686-50957728)
chr3 (204-244)||(4002525-4002565)
chr3 (171-223)||(9582607-9582659)
chr3 (151-222)||(29918282-29918353)
chr3 (151-222)||(29967435-29967506)
chr3 (204-246)||(49219811-49219853)
chr3 (204-245)||(42756171-42756212)
chr3 (205-245)||(24700733-24700773)
chr3 (204-244)||(48250889-48250929)
chr3 (204-244)||(49268865-49268905)
chr3 (200-235)||(4002762-4002797)
chr3 (204-247)||(7841131-7841174)
chr3 (116-191)||(11389573-11389647)
chr3 (204-247)||(46989557-46989600)
chr3 (203-246)||(48888751-48888794)
chr3 (204-246)||(13747738-13747780)
chr3 (208-246)||(14398546-14398584)
chr3 (204-246)||(14402990-14403032)
chr3 (204-246)||(19341614-19341656)
chr3 (204-245)||(49196469-49196510)
chr3 (158-222)||(28611048-28611112)
chr3 (204-247)||(36812846-36812890)
[»] scaffold0116 (2 HSPs)
scaffold0116 (9-246)||(11312-11547)
scaffold0116 (204-246)||(15975-16017)
[»] scaffold0038 (1 HSPs)
scaffold0038 (9-222)||(50108-50319)
[»] scaffold0361 (1 HSPs)
scaffold0361 (39-222)||(4230-4412)
[»] scaffold0494 (1 HSPs)
scaffold0494 (9-222)||(918-1132)
[»] scaffold0219 (1 HSPs)
scaffold0219 (39-245)||(15715-15920)
[»] scaffold0341 (2 HSPs)
scaffold0341 (39-222)||(17180-17363)
scaffold0341 (205-246)||(17372-17413)
[»] scaffold0744 (1 HSPs)
scaffold0744 (39-222)||(251-435)
[»] scaffold0340 (1 HSPs)
scaffold0340 (39-222)||(1011-1193)
[»] scaffold0794 (2 HSPs)
scaffold0794 (113-222)||(5332-5440)
scaffold0794 (66-94)||(5461-5489)
[»] scaffold0360 (1 HSPs)
scaffold0360 (39-94)||(7144-7199)
[»] scaffold0057 (1 HSPs)
scaffold0057 (39-90)||(23072-23123)
[»] scaffold2089 (1 HSPs)
scaffold2089 (158-228)||(287-357)
[»] scaffold0388 (1 HSPs)
scaffold0388 (41-96)||(11574-11629)
[»] scaffold0147 (2 HSPs)
scaffold0147 (39-96)||(689-746)
scaffold0147 (149-214)||(800-865)
[»] scaffold0201 (1 HSPs)
scaffold0201 (203-246)||(22414-22457)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 38945980 - 38945773
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  38945980 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttaaaaaaaaatggattttgggattgaaatggggttg 38945881  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38945880 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcagccggatttcaaa 38945781  T
Q  239 ttcctcgg 246  Q
    ||||||||    
T  38945780 ttcctcgg 38945773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 18003102 - 18003284
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  18003102 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 18003201  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18003202 ggaaatgaaggtgatgaa--aaatagtgtgcagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaact 18003284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 41560248 - 41560065
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  41560248 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 41560149  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtaggggg-agcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41560148 ggaaatgaaggtgatgaa--aaatagtgtgtaggggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaact 41560065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 10624295 - 10624477
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  10624295 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaataatggattttgggattgaaatgaggtt 10624394  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  10624395 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 10624477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 213282 - 213464
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  213282 acgtcaatagtgttttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 213381  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  213382 ggaaatgaaggtgatgaa--aaataatgtgtagggggagcaggtagctgtttcatcgtatgaaacattttcctcggcagttaact 213464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 3803367 - 3803605
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  3803367 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgttggaaaa 3803466  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | |||||||||||||| ||||| | || ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||    
T  3803467 aatattggattttgggattggaatggagatgaaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctaatgaaaca-tt 3803565  T
Q  207 tcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  3803566 tcctcggcagttaactgcagccggatttcaaattcctcgg 3803605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 20950975 - 20951108
Alignment:
Q  113 tggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctc 211  Q
    |||||||| |||||| ||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||    
T  20950975 tggatttttggattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tgtcctc 20951073  T
Q  212 ggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||| ||||||||||||||||||||    
T  20951074 ggcagttaactgcagccggatttcaaattcctcgg 20951108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 1100908 - 1101114
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |          | |||||| ||||||||| ||| | |    
T  1100908 acgtcaaaagtgtgttgatacctcctatacttgatgcttgaatgattttggatcaagaattaataaaaaaaatattggatttggggattgaa-tggaggt 1101006  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    |||||||||| |||||| ||||||||| |||||||| |||||||  || ||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  1101007 ggaaatgaagttgatgatgaaaatagtatgtagggg-agcaggtgactttttcatctgatgaaacattttcctcggcagttaactacagccggatttcaa 1101105  T
Q  238 attcctcgg 246  Q
    |||| ||||    
T  1101106 attcatcgg 1101114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 27276205 - 27276386
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn---tggattttgggattgaaatgggg 135  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||            | ||||||||||||||| ||| |    
T  27276205 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaaaatttagattttgggattgaa-tggag 27276303  T
Q  136 ttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
     ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||   |||||||| ||||||||||| ||||||    
T  27276304 gtggaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcat---atgaaaca-tttcctcggcaattaact 27276386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 5334730 - 5334623
Alignment:
Q  113 tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcg 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  5334730 tggattttgggattgaaatgaggttggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtatcatcgtatgaaacattttcctcg 5334633  T
Q  213 gcagttaact 222  Q
     |||||||||    
T  5334632 acagttaact 5334623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 7263262 - 7263078
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||  |||| |          | ||||||| |||||| ||||| | |    
T  7263262 acgtcaaatgtgtgttgatacctcctatgcttgatgattgaatgattttggatcaaggattgatggaaaaaatattggatttttggattggaatggagat 7263163  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  7263162 ggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tttcctcggcagttaact 7263078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 39794207 - 39794028
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          |||||||| |||||| ||||| | ||    
T  39794207 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatgaaaaaaaaatggatttttggattggaatggagatg 39794108  T
Q  139 gaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtt 218  Q
     ||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  39794107 aaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaaca-tatcctcggcagtt 39794028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 24749894 - 24749751
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgctt---nnnnnnnnntggattttgggattgaaatgggg 135  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||            ||||||||||||||| ||||| |    
T  24749894 acgtcaaaagtgtgttgatacctcttatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaaaaattggattttgggattg-aatggag 24749796  T
Q  136 ttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcagg 180  Q
     ||||||||||| ||||||||||||||||||||||||||||||||    
T  24749795 gtggaaatgaagttgatgaagaaaatagtgtgtagggggagcagg 24749751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 5335104 - 5335043
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5335104 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg 5335043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 41183128 - 41183236
Alignment:
Q  113 tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcg 212  Q
    ||||||| ||||||||| ||| | ||| | ||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  41183128 tggatttggggattgaa-tggaggtggtattgaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattttcctcg 41183226  T
Q  213 gcagttaact 222  Q
    ||||||||||    
T  41183227 gcagttaact 41183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 24607407 - 24607588
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |            ||||||| ||||||| ||||| |     
T  24607407 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaaatattggatttggggattg-aatggagg 24607505  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtta 219  Q
    ||| | ||||| |||||| ||||||||| ||||||||||||||||  |||||||||  |||||||||| ||||||| ||||||    
T  24607506 tggtattgaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatttgatgaaacatattcctcgacagtta 24607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 1149735 - 1149483
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg-------- 100  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||            
T  1149735 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgataaaaaa 1149636  T
Q  101 cttnnnnnnnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcagg----tagctgtttcatcaga 196  Q
     |          || |||||||||||| |||| || ||||||||||| |||||| ||||||||| |||||||||||||||    | ||||||||||| ||    
T  1149635 ataaataaatattgaattttgggattg-aatgagg-tggaaatgaagttgatgatgaaaatagtatgtagggggagcaggtggctggctgtttcatctga 1149538  T
Q  197 tgaa-----acattttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||     |  ||||||||| ||||||||||||| |||||||||||||||||||    
T  1149537 tgaataccgaggttttcctcgacagttaactgcaatcggatttcaaattcctcgg 1149483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 41008756 - 41008940
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |            ||||||| |||||||  ||||       
T  41008756 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaattattggatttggggattg-gatggaag 41008854  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | | | ||||| |||||| ||||||||||||||||||||||| || |||||||||||  ||||||||| || ||||||||||||||    
T  41008855 tagtattgaagttgatgatgaaaatagtgtgtagggggagcatgtggctgtttcatctaatgaaacatatttctcggcagttaact 41008940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 435587 - 435403
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |            ||||||| |||||||  ||||       
T  435587 acgtcaaaagtgtgttgatacctcctatgtttgatgcttgaatgattttagatcaagatttgatgaaaaaaattattggatttggggattg-gatggaag 435489  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | | | ||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||| ||||    
T  435488 tagtattgaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacatatttctcggcagtcaact 435403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 9651410 - 9651355
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9651410 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 9651355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 43950073 - 43950128
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43950073 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 43950128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 41053397 - 41053452
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41053397 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgaatttggatcaa 41053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 34921611 - 34921654
Alignment:
Q  51 tgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34921611 tgttgatacctcctatgcttgatgcttgaatgattttggatcaa 34921654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 19187051 - 19187102
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  19187051 acgtcaaatgtgtgttgatacctcctatgcttgatacttgaatgattttgga 19187102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 45475656 - 45475609
Alignment:
Q  40 cgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgatttt 87  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  45475656 cgtcaaaagtgtgttggtacctcctatgcttgatgcttgaatgatttt 45475609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 1096648 - 1096606
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  1096648 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 1096606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 3795390 - 3795349
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3795390 ttttcctcggcagttaactgcagccggatttcaaattcctcg 3795349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 27276394 - 27276434
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  27276394 ttttcctcggcagttaactgcagccggatttcaaattcctc 27276434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 45475565 - 45475501
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||||  | ||||| ||||||||    
T  45475565 aaatagtatgtagggggagcaggtggctgtttcatctgatgaaacataattctcggaagttaact 45475501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 41053501 - 41053580
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| |||||| ||||||||| | |||||||| || || | |||||||||  ||||||||| |||||||||||||||||    
T  41053501 tgaagttgatgatgaaaatagtatatagggggaacatgtggttgtttcatctcatgaaacatattcctcggcagttaact 41053580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 12908256 - 12908309
Alignment:
Q  39 acgtcaatagtgtgttgatacctcc--tatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||||||||  ||||||||||| |||||||||||||||    
T  12908256 acgtcaaaagtgtgttgatacctcctatatgcttgatgtttgaatgattttgga 12908309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 43950178 - 43950256
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| ||||||||||||||||||||| ||||  |||||||||| ||||||| ||  |  |||||||||||||    
T  43950178 gaagttgatgatgaaaatagtgtgtagggggagtaggtgtctgtttcatctgatgaaatataattttcggcagttaact 43950256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 19187171 - 19187235
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||| |||| || ||  |||||||||| |||||||||| || ||||||||||||||    
T  19187171 aaatagtgtgtagtgggaacaagtgactgtttcatccgatgaaacatatttctcggcagttaact 19187235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 25964864 - 25964821
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  25964864 ttttcctcggcagttaactgcagccggatttttaattcctcggt 25964821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 23001032 - 23001074
Alignment:
Q  48 gtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||||||||||||||||  |||||||| ||||||||||||    
T  23001032 gtgtgttgatacctcctatgactgatgcttcaatgattttgga 23001074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 24754044 - 24754086
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  24754044 ttttcctcggtagttaactgcagccgaatttcaaattcctcgg 24754086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 12908384 - 12908441
Alignment:
Q  165 gtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||  |||||||| | ||||||||||  | ||||||||||||||    
T  12908384 gtgtagggggagcaggtgcctgtttcaactgatgaaacataattctcggcagttaact 12908441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 25184850 - 25184890
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  25184850 ttttcctcggcagttaactgcagccgg-tttcaaattcctcg 25184890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 34910179 - 34910127
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatg-cttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||| |  ||||||||| ||||||||||||    
T  34910179 acgtcaaaagtgtgttgatacctcctaggatttgatgcttcaatgattttgga 34910127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 34921707 - 34921771
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||| ||||||||||||| || ||| |||||||  |||||||||  | ||||||||||||||    
T  34921707 aaatagtatgtagggggagcatgtggctatttcatctaatgaaacataattctcggcagttaact 34921771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 41183079 - 41183107
Alignment:
Q  66 tgcttgatgcttgaatgattttggatcaa 94  Q
    |||||||||||||||||||||||||||||    
T  41183079 tgcttgatgcttgaatgattttggatcaa 41183107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 618580 - 618787
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          ||||||||||||||||| |||||||    
T  618580 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattacaaaaaaaatggattttgggattgaa-tggggtt 618678  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  618679 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaa 618778  T
Q  238 attcctcgg 246  Q
    |||||||||    
T  618779 attcctcgg 618787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 43033217 - 43033035
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  43033217 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaataatggattttgggattgaaatgaggtt 43033118  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  43033117 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 43033035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 18105617 - 18105434
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           |||||||||||||||| ||| | |    
T  18105617 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaaaaaaaaggattttgggattgaa-tggaggt 18105519  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18105518 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagttgtttcatcggatgaaacattttcctcggcagttaact 18105434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 30786768 - 30786589
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  30786768 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 30786669  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtta 219  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  30786668 ggaaatgaaggtgatgaa--aaatagtgtgcagggggagcaggtagctgtttcatcggatgaaacatttccctcggcagtta 30786589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 45763623 - 45763441
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  45763623 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 45763524  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  45763523 ggaaatgagggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 45763441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 43623978 - 43624157
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggttgg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||||    
T  43623978 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggttgg 43624077  T
Q  140 aaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||    
T  43624078 aaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaaca-tttcctcggtagttaact 43624157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 29593184 - 29593390
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |          | |||||||||||||||| ||| | |    
T  29593184 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggattaagaattgatgaaaaaaatattggattttgggattgaa-tggtggt 29593282  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
     ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||    
T  29593283 agaaatgaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tttcctcggcagttaactgcagccggaattcaa 29593381  T
Q  238 attcctcgg 246  Q
    |||||||||    
T  29593382 attcctcgg 29593390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 47741981 - 47741790
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntg-gattttgggattgaaatggggtt 137  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |          |  ||||||||||||||| ||| | |    
T  47741981 acgtcaaaagtgtcttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgatgaaaaaagtattagattttgggattgaa-tggaggt 47741883  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccgga 231  Q
    |||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||| |||||    
T  47741882 ggaaatgaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaaca-tttcctcgacagttaactgcagccgga 47741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 42499684 - 42499470
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||  |||| |          
T  42499684 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcctatgcttgatgcttcaatgattttggatcaaggattgatggaaaa 42499585  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | ||||||| |||||| ||||| | || ||| ||||| |||||||||||||| ||||||||||||||||||  |||||||||| ||||||||| |     
T  42499584 aatattggatttttggattggaatggagatgaaaaatgaagttgatgaagaaaataatgtgtagggggagcaggtgactgtttcatctgatgaaaca-ta 42499486  T
Q  207 tcctcggcagttaact 222  Q
    ||||||||||||||||    
T  42499485 tcctcggcagttaact 42499470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 10708110 - 10708165
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10708110 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 10708165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 47061171 - 47061116
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47061171 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 47061116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 36186038 - 36185981
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaa 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36186038 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggagcaaaa 36185981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 15059838 - 15059793
Alignment:
Q  49 tgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15059838 tgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 15059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 47061065 - 47060987
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| |||||||||||||||| |||  |||| ||||||||||| |||||||||| || ||||||||||||||    
T  47061065 gaagttgatgatgaaaatagtgtgtaggaggaagaggtggctgtttcatctgatgaaacatatttctcggcagttaact 47060987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 42499462 - 42499420
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  42499462 ttttcctcggcagttaactgcagtcggatttcaaattcctcgg 42499420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 5537925 - 5537883
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||    
T  5537925 ttttcctcggcagttaactgcagccgaatttctaattcctcgg 5537883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 36186493 - 36186534
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  36186493 ttttcctcggcagttaactgcaaccgg-tttcgaattcctcgg 36186534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 27453615 - 27453656
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  27453615 tttcctcggcagttaactgcagccggatttttaattcctcgg 27453656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 45361706 - 45361661
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||    
T  45361706 aacatttttctcggcagttaactgcagccggatttttaattcctcg 45361661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 11997 - 11790
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  11997 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 11898  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  11897 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaa 11800  T
Q  238 attcctcggt 247  Q
    ||||||||||    
T  11799 attcctcggt 11790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 55)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 20349674 - 20349467
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  20349674 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 20349575  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  20349574 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaa 20349477  T
Q  238 attcctcggt 247  Q
    ||||||||||    
T  20349476 attcctcggt 20349467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 41454084 - 41453849
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         
T  41454084 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaa 41453985  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
         |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  41453984 aaaa-ggattttgggattgaa-tggaggtggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttc 41453887  T
Q  209 ctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  41453886 ctcggcagttaactgcagccggatttcaaattcctcgg 41453849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 29356492 - 29356727
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         
T  29356492 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaa 29356591  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  29356592 aaa-tggattttgggattgaa-tggaggtggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttc 29356689  T
Q  209 ctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  29356690 ctcggcagttaactgcagctggatttcaaattcctcgg 29356727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 15047522 - 15047343
Alignment:
Q  42 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttggaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||| ||||| |||||    
T  15047522 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaaaaaatggattttgggattgaa-tgggggtggaa 15047424  T
Q  142 atgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15047423 atgaaggtgatgaagaaaatagtgtatagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaact 15047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 44465812 - 44465606
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||         ||||||||||||||||| ||| | ||    
T  44465812 acgtcaatagtctgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaa-tggattttgggattgaa-tggaggtg 44465715  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||    
T  44465714 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagtaaactgcagccggaattcaaa 44465615  T
Q  239 ttcctcggt 247  Q
    |||||||||    
T  44465614 ttcctcggt 44465606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 31945691 - 31945873
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  31945691 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 31945790  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31945791 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaact 31945873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 247
Target Start/End: Complemental strand, 23914071 - 23913867
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttgga 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         |||||||| |||||||| ||| | ||||    
T  23914071 gtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaataaattggatttttggattgaa-tggaggtgga 23913973  T
Q  141 aatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| ||||| ||||||||    
T  23913972 aatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tttcctcagcagttaactgcagccggaattcaaatt 23913874  T
Q  241 cctcggt 247  Q
    |||||||    
T  23913873 cctcggt 23913867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 3948292 - 3948474
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  3948292 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 3948391  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  3948392 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 3948474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 38775956 - 38776138
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  38775956 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 38776055  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  38776056 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 38776138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 3983330 - 3983148
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  3983330 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaataatggattttgggattgaaatgaggtt 3983231  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  3983230 ggaaatgaaggtgaggaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 3983148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 5078190 - 5077958
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||  |||| |          
T  5078190 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcttatgcttgatgcttgaatgattttggatcaaggattgatggaaaa 5078091  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | ||||||| |||||| ||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  5078090 aatattggatttttggattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tt 5077992  T
Q  207 tcctcggcagttaactgcaaccggatttcaaatt 240  Q
    |||||||||||||||||||  |||||||||||||    
T  5077991 tcctcggcagttaactgcagtcggatttcaaatt 5077958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 30905989 - 30905782
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          | ||||||| |||||| ||||| | |    
T  30905989 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaatattggatttttggattggaatggagat 30905890  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttca 236  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||  |||||||||||||||||| ||||||||||    
T  30905889 ggaaaatgaagttgatgaagaaaatagtgtgtaggggg-gcaggtggctgtttcatctgatgaaacattc-cctcggcagttaactgcagccggatttca 30905792  T
Q  237 aattcctcgg 246  Q
    |||| |||||    
T  30905791 aatttctcgg 30905782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 22398038 - 22397853
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||| |          |||||||| |||||| ||||| | ||    
T  22398038 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaagattgatgaaaaaaaaatggatttttggattggaatggagatg 22397939  T
Q  139 gaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
     ||| ||||| ||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| | ||||||||||||||||||    
T  22397938 aaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctatttcatctgatgaaaca-tatcctcggcagttaactgc 22397853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 6561990 - 6562173
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          | |||||||||||||| ||||| | |    
T  6561990 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaatattggattttgggattggaatggagat 6562089  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  6562090 ggaaaatgaagttgatgaagaaaatagtgt-tagagggagcaggtggctgtttcatctgatgaaaca-tttcctcggcagttaact 6562173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 37015136 - 37014951
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn--tggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |            ||||||| |||||||||| | |||    
T  37015136 acgtcaaaagtgtgttgatacctcctatgcttgatgcttggatgattttggatcaagaattgataaaaaaaaatattggatttggggattgaaaggaggt 37015037  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactg 223  Q
     |||||||||| |||||| ||||| ||| |||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  37015036 -ggaaatgaagttgatgatgaaaaaagtatgtagggggatcaggtggctgtttcatctgatgaaacatattcctcggcagttaactg 37014951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 50117574 - 50117789
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |          
T  50117574 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgataaaaaa 50117673  T
Q  109 nnnn----tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacat 204  Q
            ||||||||||||||||| ||| | ||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||| ||| |||||     
T  50117674 aaaaatattggattttgggattgaa-tggaggtggaaatgaagttgatgatgaaaatagtgtgtagagggagcaggtggctgtttcatctgataaaaca- 50117771  T
Q  205 tttcctcggcagttaact 222  Q
    ||||||||||| ||||||    
T  50117772 tttcctcggcatttaact 50117789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 44620915 - 44621131
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||  |||| |          
T  44620915 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcctatgcttgatgattgaatgattttggatcaaggattgatggaaaa 44621014  T
Q  109 nnnn-tggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
         |||||||| |||||| ||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |     
T  44621015 aataatggatttttggattggaatggagatgaaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaaca-ta 44621113  T
Q  207 tcctcggcagttaactgc 224  Q
    ||||||||||||||||||    
T  44621114 tcctcggcagttaactgc 44621131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 9711555 - 9711663
Alignment:
Q  113 tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcg 212  Q
    ||||||| |||||| |||||| | ||||||||||  |||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||| |||||||    
T  9711555 tggatttggggatt-aaatggaggtggaaatgaaattgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacatattcctcg 9711653  T
Q  213 gcagttaact 222  Q
    ||||||||||    
T  9711654 gcagttaact 9711663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 13629637 - 13629473
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |            ||||||| |||||| ||||| | |    
T  13629637 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaataaaggatttttggattggaatggagat 13629538  T
Q  138 g-gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaa 201  Q
    |  |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  13629537 gaaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaa 13629473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 8460030 - 8460109
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| |||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||| || ||||||||||||||    
T  8460030 tgaagttgatgatgaaaatagtgtgtaggggaagcaggtggctgtttcatctgatgaaacatatttctcggcagttaact 8460109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 1654987 - 1654934
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654987 gtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 1654934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 46973446 - 46973389
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaa 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46973446 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggagcaaaa 46973389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 22345494 - 22345447
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22345494 agtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 22345447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 1654883 - 1654803
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||  ||||||||||  | || |||||||||||||    
T  1654883 gaagttgatgatgaaaatagtgtgtagggggagcaggtaactgtttcatacgatgaaacataattcttggcagttaactgc 1654803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 4516130 - 4516042
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||||| |||||||||||  || ||||||  | ||||||||||||||||| |||| |||  ||||||||||    
T  4516130 aaatagtgtgtagggggagcaggtggctgtttcatctaataaaacataattctcggcagttaactgcagccggtttttgaattcctcgg 4516042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 8459931 - 8459983
Alignment:
Q  42 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  8459931 tcaaaagtgtgttgatacctcttatgcttgatgcttgaatgattttggatcaa 8459983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 4516248 - 4516197
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  4516248 acgtcaaaagtgtgttgatacctcctatgtttgatgcttgaatgattttgga 4516197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 13174081 - 13174030
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  13174081 acgtcaaaagtgtgttgatacctcatatgcttgatgcttgaatgattttgga 13174030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 46973341 - 46973264
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||  | ||||||||||||||    
T  46973341 gaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatctgatgaaacataattctcggcagttaact 46973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 19498940 - 19498983
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatg 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  19498940 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatg 19498983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 21944214 - 21944257
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  21944214 agtgtgttgatacctcctatgtttgatgcttgaatgattttgga 21944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 36076390 - 36076445
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| |||||||||||| || |||||||||||||||||||| |||||||||||    
T  36076390 acgtcaaaagtgtgttgatatcttctatgcttgatgcttgaatgtttttggatcaa 36076445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 19054184 - 19054262
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| ||||||||||||||||||||||| ||  |||||| ||  |||||||||| || ||||||||||||||    
T  19054184 gaagttgatgatgaaaatagtgtgtagggggagcacgtgactgttttatttgatgaaacatatttctcggcagttaact 19054262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 44470031 - 44470073
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  44470031 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 44470073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 52802183 - 52802141
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  52802183 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 52802141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 6562182 - 6562223
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  6562182 tttcctcggcagttaactgcagccggatttcaaattcctcgg 6562223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 30910023 - 30910064
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30910023 ttttcctcggcagttaactgcagccggatttcaaattcctcg 30910064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 15047333 - 15047293
Alignment:
Q  206 ttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  15047333 ttcctcggcagttaactgcagccggatttcaaattcctcgg 15047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 6557969 - 6557926
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  6557969 attttcctcggcagttaactgcagccgaatttcaaattcctcgg 6557926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 13173961 - 13173894
Alignment:
Q  157 aaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    |||||||| ||||||||||| |||| ||||||||| | ||||||||||  | ||||||||||||||||    
T  13173961 aaaatagtatgtagggggagtaggtggctgtttcaactgatgaaacataattctcggcagttaactgc 13173894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 19499060 - 19499123
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaac 221  Q
    ||||||||||||||||||||||||  || ||||||| |||||||||| || ||| |||||||||    
T  19499060 aaatagtgtgtagggggagcaggtgactctttcatctgatgaaacatatttctctgcagttaac 19499123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 9711671 - 9711713
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
T  9711671 ttttcctcggcagttaactgcgaccggatttctaattcctcgg 9711713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 23359369 - 23359411
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  23359369 ttttcctcggtagttaactgcagccggatttcaaattcctcgg 23359411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 29352312 - 29352271
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  29352312 ttttcctcggcagttaactggagccggatttcaaattcctcg 29352271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 7981087 - 7981151
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||||| | |||||||||  |||||||||  | |||||| |||||||    
T  7981087 aaatagtgtgtagggggagcaggtggttgtttcatcttatgaaacataattctcggcggttaact 7981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 51289980 - 51290020
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  51289980 ttttcctcggcagttaactgcaaccggatttttaattcctc 51290020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 29765549 - 29765580
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttc 235  Q
    ||||||||||||||||||||||||||||||||    
T  29765549 ttttcctcggcagttaactgcaaccggatttc 29765580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 22345383 - 22345321
Alignment:
Q  160 atagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| ||||||| || ||| | ||||||||||| |||||||||| || ||||||||||||||    
T  22345383 atagtatgtagggtgaacagatggctgtttcatccgatgaaacatatttctcggcagttaact 22345321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 22346037 - 22346078
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  22346037 ttttcctcggcagttaactgcagccgg-tttcaaattcctcgg 22346078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 51288939 - 51288897
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||    
T  51288939 tttcctccgcagttaactgcagccggatttctaattcctcggt 51288897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 44336302 - 44336261
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  44336302 ttttcctcggcagttaactgcagccgaatttctaattcctcg 44336261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 8460116 - 8460159
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||||| |||||||||||||| || ||||||||||||||||||    
T  8460116 attttccttggcagttaactgcagcc-gatttcaaattcctcggt 8460159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 11183239 - 11183199
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  11183239 ttttcctcggcagttaactgcagccggatttttaattcctc 11183199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 36076506 - 36076566
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtt 218  Q
    |||||||| ||| |||||| |||| ||||||||||| ||||||||||  | ||||||||||    
T  36076506 aaatagtgcgtatggggagtaggtggctgtttcatctgatgaaacataattctcggcagtt 36076566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 36076578 - 36076622
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcggtg 248  Q
    |||||||||||||||||||||| |||| |||  ||||||||||||    
T  36076578 ttttcctcggcagttaactgcagccggtttttgaattcctcggtg 36076622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 18347259 - 18347052
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          ||||||||||||||||| |||||||    
T  18347259 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattacaaaaaaaatggattttgggattgaa-tggggtt 18347161  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||     
T  18347160 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcattggatgaaacattttcctcggcagttaactgcagccggatttcag 18347061  T
Q  238 attcctcgg 246  Q
    |||||||||    
T  18347060 attcctcgg 18347052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 28250157 - 28249946
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||         
T  28250157 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgataccttctatgcttgacgcttgaatgattttggatcaaaaattgattaaaaa 28250058  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28250057 aaa-tggattttgggattgaa-tggaagtggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcaaatgaaacattttc 28249960  T
Q  209 ctcggcagttaact 222  Q
    ||||||||||||||    
T  28249959 ctcggcagttaact 28249946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 1612577 - 1612759
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||          |||||||||||||||||||| ||||    
T  1612577 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgaatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 1612676  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  1612677 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 1612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 13388572 - 13388720
Alignment:
Q  72 atgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagg 171  Q
    ||||||||||||||||||||||||||||| |          ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  13388572 atgcttgaatgattttggatcaaaaattgat-aaaaaaaaatggattttgggattgaa-tggaggtggaaatgaaggtgatgaagaaaatagtgtgtagg 13388669  T
Q  172 gggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  13388670 gggagcaggtagttgtttcatcggatgaaacattttcctcggcagttaact 13388720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 2052458 - 2052610
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||  |         ||||||| ||||||| ||||| | ||    
T  2052458 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttg-atgaaaaaaattggatttggggattg-aatggaggtg 2052555  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 193  Q
    | | ||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  2052556 gtattgaagttgatgatgaaaatagtatgtagggggagcaggtagctgtttcatc 2052610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 31146620 - 31146434
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-----tggattttgggattgaaatgg 133  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |               ||||||| ||||||||| |||    
T  31146620 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaatatttgataaaaaataataatattggatttggggattgaa-tgg 31146522  T
Q  134 ggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
        | |||||||| |||||| |||| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  31146521 tagggaaaatgaagttgatgatgaaa-tagtgtgtagggggagcagatggctgtttcatcagatgaaacatattcctcggcagttaact 31146434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 7363145 - 7363327
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |            || |||| ||||||| ||||| |     
T  7363145 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaaatattgaatttggggattg-aatggagg 7363243  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaa 220  Q
    ||| | ||||| |||||| ||||||||| |||||||||||||| |  |||||||||| |||||||||| ||||||| |||||||    
T  7363244 tggtattgaagttgatgatgaaaatagtatgtagggggagcagatgactgtttcatctgatgaaacatattcctcgacagttaa 7363327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 18606289 - 18606234
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18606289 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttgaatcaa 18606234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 26702062 - 26702011
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26702062 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 26702011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 7361404 - 7361354
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggat 91  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  7361404 gtcaaaagtgtgttgatacctcctatgtttgatgcttgaatgattttggat 7361354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 18606183 - 18606107
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaa 220  Q
    |||| |||||| ||||||||||||||||||||||||||  |||||||||| ||| ||| || || ||||||||||||    
T  18606183 gaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcatctgataaaatatatttctcggcagttaa 18606107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 23985955 - 23986027
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccgg 230  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||| || |  |||||||||||||||||||    
T  23985955 aaatggtgtgtagggggagcaggtgactgtttcatctgatgaaacatatttcatggcagttaactgcaaccgg 23986027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 24218252 - 24218209
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  24218252 agtgtgttgatacctcctatgcttgatgcttcaatgattttgga 24218209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 28362751 - 28362793
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  28362751 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 28362793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 13479828 - 13479758
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatc---agatgaaacattttcctcggcagttaactgca 225  Q
    |||||||||||||||||||||||| |||||||||||   |||||||||||  | ||| |||||||||||||    
T  13479828 aaatagtgtgtagggggagcaggtggctgtttcatctgaagatgaaacataattctcagcagttaactgca 13479758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 2260175 - 2260226
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||||| |||||| ||||||||| ||||||||||||    
T  2260175 acgtcaaaagtgtgttgataccgcctatgtttgatgcttcaatgattttgga 2260226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 31146426 - 31146384
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  31146426 ttttcctcgacagttaactgcagccggatttcaaattcctcgg 31146384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 2051081 - 2051040
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  2051081 ttttcctcggcagttaactgcaaccgg-tttcaaattcatcgg 2051040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 16192894 - 16192828
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    ||||||||||||||| || || || ||||||||| | ||||||||||  | ||||||||||||||||    
T  16192894 aaatagtgtgtagggagaacatgtggctgtttcagctgatgaaacataattctcggcagttaactgc 16192828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 23985845 - 23985886
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttg 88  Q
    |||||| | ||| |||||||||||||||||||||||||||||    
T  23985845 agtgtgctaatagctcctatgcttgatgcttgaatgattttg 23985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 31771760 - 31771797
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaatt 240  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  31771760 attttcctcggcagttaactgcagccggatttctaatt 31771797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 37820711 - 37820916
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||| |||   ||    
T  37820711 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaaaaa-tggattttgggattgaa-tggaaatg 37820808  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37820809 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaa 37820908  T
Q  239 ttcctcgg 246  Q
    ||||||||    
T  37820909 ttcctcgg 37820916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 13567901 - 13568137
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||         
T  13567901 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgataccttctatgcttgatgcttgaatgattttggataaaaaattgattaaaaa 13568000  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
         |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13568001 aaaaaggattttgggattgaa-tggaggtggaaatgaaggtgatgaagaaaatagtgtgtaggtggagcaggtagctgtttcatcagatgaaacattttc 13568099  T
Q  209 ctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  13568100 ctcggcagttaactgcagccggatttcaaattcctcgg 13568137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 7021714 - 7021918
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||         ||||||||||||||||| ||| | ||    
T  7021714 acgtcaatagtgtgttgatacctcctatgtttgatgcttgaattattttggatcaaaaattgattaaaaaaaaatggattttgggattgaa-tggaggtg 7021812  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7021813 aaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaa 7021912  T
Q  239 ttcctc 244  Q
    ||||||    
T  7021913 ttcctc 7021918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 27867676 - 27867882
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         ||||||||||||||||| ||| | ||    
T  27867676 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaaatggattttgggattgaa-tggaggtg 27867774  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||    
T  27867775 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtggttgtttcatcggatgaaacattttcctcggcagtaaactgcagccggaattcaaa 27867874  T
Q  239 ttcctcgg 246  Q
    ||||||||    
T  27867875 ttcctcgg 27867882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 14280060 - 14279883
Alignment:
Q  46 tagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggttggaaatg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| |||||||||||    
T  14280060 tagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggttggaaatg 14279961  T
Q  145 aaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  14279960 aaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcgggagttaactgc 14279883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 34078040 - 34077828
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         
T  34078040 tcgaataaaatgcacaatacctgtctttttacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaa 34077941  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        || |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  34077940 aaaatgaattttgggattgaa-tggagatggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtgactgtttcatcggatgaaacattttc 34077842  T
Q  209 ctcggcagttaact 222  Q
    ||||||| ||||||    
T  34077841 ctcggcaattaact 34077828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 28886249 - 28886427
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||  ||||| |||    |    
T  28886249 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattaaaaaaaattggattttggatttgaa-tggaagag 28886347  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28886348 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggtagtt 28886427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 25896910 - 25897091
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         ||||||||||||||||| ||| | ||    
T  25896910 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaattggattttgggattgaa-tggaggtg 25897008  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  25897009 gaaatgaaggtgatgaagaaaatagcgtgtagggggagcaggtggctgtttcatcggatgaaaca-tttcctcggcagttaact 25897091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 1035457 - 1035245
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         
T  1035457 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaga 1035358  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacatttt 207  Q
        | |||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||    
T  1035357 aaaattggattttgggattgaa-tggaggtggaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-ttt 1035260  T
Q  208 cctcggcagttaact 222  Q
    |||||||||||||||    
T  1035259 cctcggcagttaact 1035245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 28387510 - 28387330
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggttgg 139  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |          | |||||||||||||||| ||| | | |    
T  28387510 gtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggattaagaattgatgaaaaaaatattggattttgggattgaa-tggtggtag 28387412  T
Q  140 aaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||    
T  28387411 aaatgaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tttcatcggcagttaact 28387330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 34123720 - 34123918
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct---tnn 105  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |          
T  34123720 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgataaaaaa 34123819  T
Q  106 nnnnnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacatt 205  Q
           ||||||||||||||| ||||| | ||||||||||| |||||| ||||||||| ||||||||||||||||  |||||||||| |||||||||||    
T  34123820 aaattattggattttgggattg-aatggaggtggaaatgaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatt 34123918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 38860031 - 38860197
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          || ||||| |||||  ||||| | ||    
T  38860031 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaaaatgaatttttggattagaatggagatg 38860130  T
Q  139 gaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacat 204  Q
     ||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  38860131 aaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaacat 38860197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 11033292 - 11033474
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||  |||| |          |||||||| |||||| ||||| | ||    
T  11033292 acgtcaaatgtgtgttgatacctcctatgtttgatgcttgaatgattttggatcaaggattgat-gaaaaaaaatggatttttggattggaatggagatg 11033390  T
Q  139 gaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
     ||| ||||| ||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| | ||||||||| ||||||    
T  11033391 aaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctatttcatctgatgaaaca-tatcctcggcaattaact 11033474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 7800816 - 7800999
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |           ||||||| ||||||| ||||| | |    
T  7800816 acgtcaaaagtgtgttgatacctcctatgtttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattggatttggggattg-aatggaggt 7800914  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    || | ||||| |||||| |||||||||  ||||| |||||||||  |||||||||| |||||||||| |||||| ||||||||||    
T  7800915 ggtattgaagttgatgatgaaaatagtacgtaggaggagcaggtgactgtttcatctgatgaaacatattcctcagcagttaact 7800999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 4204039 - 4204223
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |            ||||||| |||| ||  ||||       
T  4204039 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaattattggatttggggactg-gatggaag 4204137  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | | | ||||| |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||||||||||||    
T  4204138 tagtattgaagttgatgatgaaaatagtgtgtagagggagcaggtagttgtttcatctgatgaaacatatttctcggcagttaact 4204223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 31098763 - 31098943
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn--tggattttgggattgaaatggggt 136  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| | ||| |            || |||  |||||||||  | |||    
T  31098763 acgtcaaaagtgtgttgataccttctatgcatgatgcttgaatgattttggatcaagatttgatgaaaaaaaatattgaattgggggattgaatagaggt 31098862  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtt 218  Q
     |||||||||| |||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||  ||||||||||||    
T  31098863 -ggaaatgaagttgatgatgaaaatagtatgtagggggagcagatggctgtttcatctgatgaaacataatcctcggcagtt 31098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 33993523 - 33993462
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  33993523 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaataattttggagcaagaattg 33993462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 18538163 - 18538214
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  18538163 acgtcaaaagtgtgttgatacctcctatgctttatgcttgaatgattttgga 18538214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 34944083 - 34944032
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  34944083 acgtcaaaagtgtgttgatacctcctatgcttgatgcttcaatgattttgga 34944032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 27863482 - 27863440
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27863482 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 27863440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 18538283 - 18538347
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||  | ||||||||||||||    
T  18538283 aaatagtgtgtagggggagcaggtggctgtttcatctaatgaaacataattctcggcagttaact 18538347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 21999297 - 21999246
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  21999297 acgtcaaaagtgtgttgatacctcctatgcttgatgcttcaataattttgga 21999246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 33993418 - 33993341
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||  | ||||||||||||||    
T  33993418 gaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcaactgatgaaacataattctcggcagttaact 33993341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 34122577 - 34122535
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34122577 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 34122535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 28388539 - 28388581
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  28388539 ttttcctcggcagttaactgcagctggatttcaaattcctcgg 28388581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 30354235 - 30354277
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttgg 89  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  30354235 agtgtgttgatatctcctatgcttgatacttgaatgattttgg 30354277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 21979691 - 21979646
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaaca 203  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||    
T  21979691 aaatagtgtgtagggggagcatgtggctgtttcatctgatgaaaca 21979646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 8539532 - 8539567
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttc 235  Q
    |||||||||||||||||||||||||| |||||||||    
T  8539532 aacattttcctcggcagttaactgcagccggatttc 8539567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 11348491 - 11348526
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttc 235  Q
    |||||||||||||||||||||||||| |||||||||    
T  11348491 aacattttcctcggcagttaactgcatccggatttc 11348526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 20285253 - 20285202
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||| ||| | ||||||||| ||||||||||||    
T  20285253 acgtcaaaagtgtgttgataccttctaggattgatgcttaaatgattttgga 20285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 25890047 - 25890005
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||| |||||||||||  |||||||||||||||||||    
T  25890047 ttttcctcggtagttaactgcagtcggatttcaaattcctcgg 25890005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 25897100 - 25897142
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||| |||||||||||||| ||||| |||||||||||||||    
T  25897100 tttcctgggcagttaactgcagccggagttcaaattcctcggt 25897142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 39743168 - 39743210
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  39743168 ttttcctcggcagttaactgcagtcgaatttcaaattcctcgg 39743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 1396338 - 1396297
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||| ||||||||| |||||||||||| ||||||||||    
T  1396338 tttcctcgacagttaactacaaccggatttctaattcctcgg 1396297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 28387321 - 28387280
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  28387321 tttcctcggcaattaactgcagccggaattcaaattcctcgg 28387280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 30887382 - 30887419
Alignment:
Q  206 ttcctcggcagttaactgcaaccggatttcaaattcct 243  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  30887382 ttcctcggcagttaactgcagccggatttctaattcct 30887419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 34123955 - 34123996
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    ||||||| |||||||||||||| |||||||||||||| ||||    
T  34123955 ttttccttggcagttaactgcagccggatttcaaatttctcg 34123996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 41798871 - 41798834
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattc 241  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  41798871 ttttcttcggcagttaactgcagccggatttcaaattc 41798834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 8066 - 8098
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttc 235  Q
    ||||||||||||||||||||||||||| |||||    
T  8066 attttcctcggcagttaactgcaaccgtatttc 8098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 542811 - 542851
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    ||||||||||||||| ||||| ||||||||| |||||||||    
T  542811 tttcctcggcagttagctgcagccggatttctaattcctcg 542851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 7340310 - 7340128
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  7340310 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 7340211  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7340210 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaact 7340128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 30305399 - 30305583
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  30305399 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 30305498  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  30305499 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagttgtttcatcagatgaaacattttcctcggtagttaactgc 30305583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 32378751 - 32378933
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  32378751 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 32378850  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  32378851 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 32378933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 32432706 - 32432888
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  32432706 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 32432805  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  32432806 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagttaact 32432888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 31958081 - 31957844
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         
T  31958081 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaa 31957982  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacatttt 207  Q
        | |||||||||||||||| ||| |  | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||    
T  31957981 aatattggattttgggattgaa-tggaggggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-ttt 31957884  T
Q  208 cctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||| ||||||||||| ||||| |||||||||||||||    
T  31957883 cctcggtagttaactgcagccggaattcaaattcctcggt 31957844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 8423663 - 8423813
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgctt-nnnnnnnnntggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  8423663 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 8423762  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttc 190  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  8423763 ggaaatgaaggtgatga--aaaatagtgtgtatggggagcaggtagctgtttc 8423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 45454549 - 45454417
Alignment:
Q  113 tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcg 212  Q
    ||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| |||||||||||||||| | ||||||||| |||||||||| |||||||    
T  45454549 tggatttggggattgaa-tggaggtggaaatgaagttgatgatgaaaatagtatgtagggggagcaggtggttgtttcatctgatgaaacatattcctcg 45454451  T
Q  213 gcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||| ||||||||||||||||||||    
T  45454450 gcagttaactgcatccggatttcaaattcctcgg 45454417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 41744549 - 41744755
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn--tggattttgggattgaaatggggt 136  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || ||||| |            ||||||||||||||||| ||| |     
T  41744549 acgtcaaaagtatgttgatacctcctatgcttgatgcttgaatgattttagattaagaattgatgaaaaaaaatattggattttgggattgaa-tggtgg 41744647  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttca 236  Q
    | ||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||| ||| ||| | ||||    
T  41744648 tagaaatgaagttgatgatgaaaatagtgtgtagggggagcatgtggctgtttcatctgatgaaaca-tttcctcagcagttaacggcagccgaaattca 41744746  T
Q  237 aattcctcg 245  Q
    |||||||||    
T  41744747 aattcctcg 41744755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 35966549 - 35966746
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |          
T  35966549 tcgaataaaatgcacaatacctgtttttttacgttaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgataaaaaa 35966648  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        |||||||| ||| |  ||||| | || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  35966649 atattggatttttggaattgaatggaggtgaaaatgaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattt 35966746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 1115017 - 1114804
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  1115017 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaa 1114918  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | ||||||| |||||| ||||| | |||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||    
T  1114917 aatattggatttttggattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgta-ggggagcaggtggctgtttcatctgatgaaaca-tt 1114820  T
Q  207 tcctcggcagttaact 222  Q
     |||||||||||||||    
T  1114819 ccctcggcagttaact 1114804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 2146786 - 2146969
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |           ||||||| ||||||| ||||| | |    
T  2146786 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattggatttggggattg-aatggaggt 2146884  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    || | ||||| |||||| ||||||||| |||||||||||||||| |||||||||||  ||||||||| ||| |||||||||||||    
T  2146885 ggtattgaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctaatgaaacatattcatcggcagttaact 2146969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 39752854 - 39753059
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| | ||| |            ||||||| ||||||| ||||| | ||    
T  39752854 gtcaaaagtgtgttgatacctcctatgcttgatacttgaatgattttagatcaagatttgatgaaaaaaaatattggatttggggattg-aatggaggtg 39752952  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    | | ||||| |||||| ||||||||| ||||||||||  |||||  ||||||||| |||||||||| |||||||| | ||||||||| |||| |||||||    
T  39752953 gtattgaagttgatgatgaaaatagtatgtagggggaataggtatatgtttcatctgatgaaacatattcctcggtatttaactgcagccgg-tttcaaa 39753051  T
Q  239 ttcctcgg 246  Q
    ||||||||    
T  39753052 ttcctcgg 39753059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 43370022 - 43369840
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggttgg 139  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |           ||||||| ||||||| ||||| | |||    
T  43370022 gtcaaaagtgtgttgatacctcctatgcttcatgcttgaatgattttggatcaagatttgttgaaaaaaatattggatttggggattg-aatggaggtgg 43369924  T
Q  140 aaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactg 223  Q
     | ||||| |||||| ||||||||| | ||||| ||||||||  |||||||||| ||||| |||| |||||||| |||||||||    
T  43369923 tattgaagttgatgatgaaaatagtatatagggagagcaggtgactgtttcatctgatgagacatattcctcggtagttaactg 43369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 43689830 - 43689885
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43689830 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 43689885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 20547012 - 20546951
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg 100  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  20547012 acgtcaaaagtgtattgatacctcctatgcttgatgcttgaatgattttggatcaagaattg 20546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 18206029 - 18205974
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  18206029 acgtcaaaagtgtgttaatacctcctatgcttgatgcttgaatgattttggatcaa 18205974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 18205924 - 18205847
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||  | ||||||||||||||    
T  18205924 gaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatctgatgaaacataattctcggcagttaact 18205847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 4866559 - 4866495
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| |||||||||||| ||||| ||||||||||| ||||||||||||| |||| |||||||||    
T  4866559 aaatattgtgtagggggaacaggtggctgtttcatctgatgaaacatttttctcgacagttaact 4866495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 22577790 - 22577726
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||  | ||||||||||||||    
T  22577790 aaatagtgtgtggggggagcaggtggctgtttcatctgatgaaacatacttctcggcagttaact 22577726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 22577904 - 22577857
Alignment:
Q  42 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgg 89  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  22577904 tcaaaagtgtgttgatacctcctatgcttgatgctcgaatgattttgg 22577857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 45454633 - 45454586
Alignment:
Q  53 ttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattg 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  45454633 ttgatacctcctatgcttgatgtttgaatgattttggatcaagaattg 45454586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 39536 - 39495
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39536 ttttcctcggcagttaactgcagccggatttcaaattcctcg 39495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 4866678 - 4866627
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||| ||| |||||||||||||| ||||||||||||    
T  4866678 acgtcaaaagtgtgttgatatctcttatgcttgatgcttcaatgattttgga 4866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 41743943 - 41743901
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  41743943 ttttcttcggcagttaactgcagccggatttcaaattcctcgg 41743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 1114795 - 1114754
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  1114795 tttcctcggcagttaactgcagccggatttcaaatttctcgg 1114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 1116208 - 1116249
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  1116208 tttttctcggcagttaactgcagccggatttcaaattcctcg 1116249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 35389648 - 35389587
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacat 204  Q
    ||||| |||||| ||||||||| |||||||||||||| | | ||||||||| ||||||||||    
T  35389648 tgaagttgatgatgaaaatagtatgtagggggagcagatggttgtttcatctgatgaaacat 35389587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 35962360 - 35962319
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  35962360 ttttcctcggcagttaactgtagccggatttcaaattcctcg 35962319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 38872950 - 38872993
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||    
T  38872950 ttttcctcggcagttaactgcagccggtttttaaattcctcggt 38872993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 20549252 - 20549294
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  20549252 ttttcctcggtagttaactgcagccgaatttcaaattcctcgg 20549294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 43262474 - 43262432
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| | ||||||||||| ||||||    
T  43262474 ttttcctcggcagttaactgcagctggatttcaaatacctcgg 43262432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 49566305 - 49566489
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  49566305 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 49566404  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  49566405 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggtagttaactgc 49566489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 3404043 - 3403908
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          ||||||||||||||| ||||| | ||    
T  3404043 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgatcaaaaaaaaatggattttgggattg-aatggaggtg 3403945  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtaggggga 175  Q
    |||||||||||||||||||||||||||||||||||||    
T  3403944 gaaatgaaggtgatgaagaaaatagtgtgtaggggga 3403908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 15999597 - 15999811
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  15999597 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaa 15999696  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | ||||||| |||||| ||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  15999697 aatattggatttttggattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tt 15999795  T
Q  207 tcctcggcagttaact 222  Q
    ||||||||||||||||    
T  15999796 tcctcggcagttaact 15999811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 1088079 - 1087893
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |          | ||| ||| |||||| ||||| |      
T  1088079 acgtcaaatgtgtgttgataccttctatgcttgatgcttgaatgattttggatcaaagattgatggaaaaaatattggaattttggattggaatggagaa 1087980  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  1087979 ggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatctgatgaaaca-tttcctcggcagttaactgc 1087893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 19073453 - 19073649
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  19073453 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaa 19073552  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaaca 203  Q
        | |||||||| ||||| ||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  19073553 aatattggattttgtgattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca 19073649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 13173476 - 13173299
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          |||||||| |||||| ||||| | ||    
T  13173476 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgat--gaaaaaaatggatttttggattggaatggagatg 13173379  T
Q  139 gaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagtt 218  Q
     ||| ||||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  13173378 aaaaatgaagttgatgaagaaaatagaatgtagggggagcaggtggctgtttcatcagatgaaaca-tatcctcggcagtt 13173299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 9890239 - 9890055
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntgga-ttttgggattgaaatggggtt 137  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||  |||| |          | || |||| |||||| ||||| | |    
T  9890239 acgtcaaatgtgtgttgatacctcttatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaatattgaatttttggattggaatggagat 9890140  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||    
T  9890139 gaaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tatcctcggcagttaact 9890055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 4976009 - 4975827
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |           || |||| ||||||| ||||| | |    
T  4976009 acgtcaaaagtgtgttgatacctcctatgcttgatgctggaatgattttggatcaagatttgatgaaaaaaatattgaatttggggattg-aatggaggt 4975911  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaac 221  Q
    || | ||||| ||||||  |||||||| ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||    
T  4975910 ggtattgaagttgatgataaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcggcagttaac 4975827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 41023659 - 41023485
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnn 107  Q
    ||||| || ||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  41023659 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaatgattgatggaaaa 41023560  T
Q  108 nnnnntggattttgggattgaaatggggttgg-aaatgaaggtgatgaagaaaatagtgtgtagggggagcaggt 181  Q
         |||||| |||||||| ||||| | ||| |||||||| |||||||||||||| ||||||||||||||||||    
T  41023559 aatattggattctgggattggaatggagatggaaaatgaagttgatgaagaaaataatgtgtagggggagcaggt 41023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 21471146 - 21470964
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |          ||||||| || ||||  ||||   ||    
T  21471146 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaatattggatttgggaattg-gatggaagtg 21471048  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | |  |||| ||| || |||||||||||||| |||||||||||  |||||||||| |||||||||| || ||||||||||||||    
T  21471047 gtatggaagttgacgatgaaaatagtgtgtatggggagcaggtgactgtttcatccgatgaaacatatttctcggcagttaact 21470964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 4768896 - 4768689
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||| |          | |||||| ||||||| | |||   |    
T  4768896 acgtcaaaagggtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattggatttagggattgga-tggaagt 4768798  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaa 237  Q
    || |  |||  |||||| ||||||||| ||||||||||||||||  |||||||||  |||||||||| || ||||||||||||||||| || |||||  |    
T  4768797 ggtatggaaattgatgatgaaaatagtatgtagggggagcaggtgactgtttcatatgatgaaacatatttctcggcagttaactgcagccagattttga 4768698  T
Q  238 attcctcgg 246  Q
    |||||||||    
T  4768697 attcctcgg 4768689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 44049342 - 44049287
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44049342 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 44049287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 3403909 - 3403858
Alignment:
Q  195 gatgaaacattttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3403909 gatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcgg 3403858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 4979850 - 4979929
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||| |||||| ||| |||||||||||||||||    
T  4979850 tgaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctgatgaagcatattcctcggcagttaact 4979929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 11494787 - 11494732
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11494787 acgtcaaaagtgtgtggatacctcctatgcttgatgcttgaatgattttggatcaa 11494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 18581161 - 18581212
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  18581161 acgtcaaaagtctgttgatacctcctatgcttgatgcttgaatgattttgga 18581212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 18581280 - 18581347
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgca 225  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||  | |||||||||||||||||    
T  18581280 aaatagtgtgtagggggagcaggtggttgtttcatctgatgaaacataattctcggcagttaactgca 18581347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 51644328 - 51644379
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  51644328 acgtcaaaagtgtgttgatacctcatatgcttgatgcttgaatgattttgga 51644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 17139723 - 17139651
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccgg 230  Q
    ||||||||| ||||| |||||| |  |||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  17139723 aaatagtgtttagggagagcagatgactgtttcatctgatgaaacatttttctcggcagttaactgcagccgg 17139651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 17139848 - 17139797
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  17139848 acgtcaaaagtgtgttgatacctcctatggttgatgcttcaatgattttgga 17139797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 30042686 - 30042635
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  30042686 acgtcaaaagggtgttgatacctcctatgcttgatgcttaaatgattttgga 30042635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 38464598 - 38464653
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||    
T  38464598 acgtcaaaagtgtgctaatacctcttatgcttgatgcttgaatgattttggatcaa 38464653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 9890047 - 9890005
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  9890047 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 9890005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 15995775 - 15995733
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  15995775 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 15995733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 19069240 - 19069198
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  19069240 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 19069198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 3449908 - 3449965
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaa 96  Q
    ||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  3449908 acgtcaaaaatgtgttgatacctcttatgcctgatgcttgaatgattttggagcaaaa 3449965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 3450019 - 3450084
Alignment:
Q  149 tgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggc 214  Q
    |||||| |||||||||||||||||||||||||   |||||||||| |||||||||| || ||||||    
T  3450019 tgatgatgaaaatagtgtgtagggggagcaggggactgtttcatctgatgaaacatatttctcggc 3450084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 44049238 - 44049177
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacat 204  Q
    ||||| |||||| ||||||||| |||||||||||||||| | ||||||||| ||||||||||    
T  44049238 tgaagttgatgatgaaaatagtatgtagggggagcaggtggttgtttcatctgatgaaacat 44049177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 30042568 - 30042509
Alignment:
Q  165 gtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgca 225  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||    
T  30042568 gtgtaggaggagcaggtggctgtttcatctgatgaaaca-tttcttcggcagttaactgca 30042509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 24417247 - 24417298
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||||||||||||    
T  24417247 acgtcaaaagtgtgttgatatctcctatgtttgatgcttcaatgattttgga 24417298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 51644447 - 51644514
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgca 225  Q
    |||||||||||||||||||||| | ||||||||||  ||||||||||  |  ||||||||||||||||    
T  51644447 aaatagtgtgtagggggagcagatggctgtttcatttgatgaaacataattatcggcagttaactgca 51644514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 11494682 - 11494604
Alignment:
Q  144 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| |||||| |||||||||||||| ||| ||||||| |||||||||||  |||||||||  |  |||||||||||||    
T  11494682 gaagttgatgatgaaaatagtgtgtaagggaagcaggtggctgtttcatctcatgaaacataattttcggcagttaact 11494604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 37394302 - 37394260
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  37394302 atttacctcggcagttaactgcatccggatttcaaattcctcg 37394260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 1044535 - 1044576
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttcaaattc 241  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  1044535 aacattttcctcggcagttaactgcagccagatttcaaattc 1044576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 19073676 - 19073713
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcc 242  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  19073676 tttcctcggcagttaactgcagccggatttcaaattcc 19073713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 37395211 - 37395252
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  37395211 ttttcctcggcaattaactgcagccggatttcaaattcctcg 37395252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 50274812 - 50274771
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  50274812 tttcctcggcagttaactgcagccggatttctaattcctcgg 50274771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 9491275 - 9491319
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||    
T  9491275 aacactttcttcggcagttaactgcagccggatttcaaattcctc 9491319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 8361863 - 8361910
Alignment:
Q  47 agtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  8361863 agtgtgttgatacctcctaggattgattcttcaatgattttggatcaa 8361910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 55407812 - 55407855
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  55407812 attttcctcggcagttaactgcagccggatttttaattcctcgg 55407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 15999819 - 15999861
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||| |||| |||||||||||||| |||||    
T  15999819 ttttcctcggcagttaattgcagccggatttcaaatttctcgg 15999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 24417370 - 24417431
Alignment:
Q  162 agtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    |||||||||||| |||| || ||||||||||| ||||||||||||| |||| |||||| ||||    
T  24417370 agtgtgtagggg-agcaagtggctgtttcatctgatgaaacatttttctcgacagttagctgc 24417431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 41023438 - 41023397
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||| ||||||||||||| |||||||||||||| |||||    
T  41023438 tttcctcagcagttaactgcagccggatttcaaatttctcgg 41023397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 50278818 - 50278855
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattc 241  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  50278818 ttttcctcggcagttaactgcagccggatttctaattc 50278855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 30947483 - 30947665
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  30947483 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 30947582  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  30947583 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacatttccctcggcagttaact 30947665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 8160825 - 8161009
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  8160825 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 8160924  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||    
T  8160925 ggaaatgaaggtgatgaa--aaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttctctcggcagttaactgc 8161009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 13747520 - 13747731
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||         
T  13747520 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgatacctcctatacttgatgcttgaatgattttggatcaaaaattgattaaaaa 13747619  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  13747620 aaa-tggattttgggattgaa-tggaggtggaaatgaaggtgatgaagaaaatagagtgtagggggagcaggtggctgtttcatcggatgaaacattttc 13747717  T
Q  209 ctcggcagttaact 222  Q
    ||||||||||||||    
T  13747718 ctcggcagttaact 13747731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 3948963 - 3948790
Alignment:
Q  48 gtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggttggaaatgaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| |||||||||||||    
T  3948963 gtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggttggaaatgaa 3948864  T
Q  147 ggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||  ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  3948863 ggtgatgaa--aaatagtgtgtagggggagcaggtagcagtttcatcggatgaaacatttccctcggcagttaact 3948790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 6741106 - 6740951
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn-tggattttgggattgaaatggggtt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||| ||||    
T  6741106 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgattatagaaaaaatggattttgggattgaaatgaggtt 6741007  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6741006 ggaaatgaaggtgatgaagaaagtagtgtgtagggggagcaggtagctgtttcatc 6740951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 9429677 - 9429861
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt--ggattttgggattgaaatggggt 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||            |||||||||||||||| ||| |     
T  9429677 acgtcaatagtgtgttgatacctcctatacttgatgcttgaatgattttggatcaaaaattgatttaaaaaaaaaaaggattttgggattgaa-tggagg 9429775  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9429776 tggaaatgaaggtgatgaagaaaacagtgtgtagggggagcaggtagttgtttcatcggatgaaacattttcctcggcagttaact 9429861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 23442961 - 23443168
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaa--atggggt 136  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         |||||||||||||||||  |||| |     
T  23442961 acgtcaaaactgtgttgatacctcctatgcttgatgcttgaatgattttggatcaataattgattaaaaaaaa-tggattttgggattgaataatggagg 23443059  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttca 236  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| | ||||||||||||||||| ||||| ||||    
T  23443060 tggaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggttgtttcatctgatgaaacattct-ctcggcagttaactgcagccggaattca 23443158  T
Q  237 aattcctcgg 246  Q
    ||||||||||    
T  23443159 aattcctcgg 23443168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 50953519 - 50953316
Alignment:
Q  42 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn--tggattttgggattgaaatggggttgg 139  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |            ||||||||||||||| ||||| | |||    
T  50953519 tcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgttggaaaaaaatattggattttgggattggaatggagatgg 50953420  T
Q  140 aaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||    
T  50953419 aaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaata-tttcctcggcagttaactgcagccggatttcaaa 50953321  T
Q  239 ttcct 243  Q
    |||||    
T  50953320 ttcct 50953316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 36817352 - 36817533
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         | |||||||||||||||| ||| | |    
T  36817352 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaaaattggattttgggattgaa-tggaggt 36817450  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  36817451 ggaaatgaaggtgatgaagaaaatagtgtgta-ggggagcaggtggctgtttcatccgatgaaaca-tttcctcggcagttaact 36817533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 14398806 - 14398596
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||         
T  14398806 tcgaataaaatgcacaatacctgtttttttacgtcaaaagtgtgttgatacctcctatgtttgatgcttgaatgattttggatcaagaattgattaaaaa 14398707  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  14398706 aaa-tggattttgggattgaa-tggaggtggaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tttc 14398610  T
Q  209 ctcggcagttaact 222  Q
    |||| |||||||||    
T  14398609 ctcgacagttaact 14398596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 2745059 - 2745265
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          | |||||||||||||| ||||| | |    
T  2745059 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatgaaaaaaatattggattttgggattggaatggagat 2745158  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttca 236  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    ||||| |||||||||||| ||| ||||||    
T  2745159 ggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-gaccctcgacagttaactgcagccgaatttca 2745257  T
Q  237 aattcctc 244  Q
    ||||||||    
T  2745258 aattcctc 2745265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 48250698 - 48250881
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn--tggattttgggattgaaatggggt 136  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |            ||||||||||||||||| ||| |     
T  48250698 acgtcaaaagtatgttgatacctcctatgcttgatgcttgaatgatttttgatcaagaattgataaaaaaaaatattggattttgggattgaa-tggagg 48250796  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  48250797 tgtaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacatttt-ctcggcagttaact 48250881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 7842843 - 7843028
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnn----tggattttgggattgaaatggg 134  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |              ||||||||||||||||| |||     
T  7842843 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttgaatcaagaattgataaaaaaaaaaatattggattttgggattgaa-tgga 7842941  T
Q  135 gttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaac 221  Q
    | ||||||||||| |||||| ||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  7842942 ggtggaaatgaagttgatgatgaaaataatgtgtaggaggagcaggtggctgtttcatccgatgaaacattttcctcggaagttaac 7843028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 46993060 - 46993244
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |          | |||||||||||||||| ||| | |    
T  46993060 acgtcaaaagtgtgttgatacctcctatgcttgataattgaatgattttggatcaagaattgatgaaaaaaatattggattttgggattgaa-tggaggt 46993158  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgc 224  Q
    |||||||||| |||||| ||||||| | |||| ||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||    
T  46993159 ggaaatgaagttgatgatgaaaataatatgtaaggggagcaggtggctgtttcatctgatgaaaca-tttcctcgacagttaactgc 46993244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 7837836 - 7837656
Alignment:
Q  42 tcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgg-gattgaaatggggttgga 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |          | || ||||| ||||| ||||| | |||     
T  7837836 tcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattgaatttggagattg-aatggaggtggt 7837738  T
Q  141 aatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    | ||||| |||||| ||||||||| ||||||||||||||||  |||||||||| |||||||||| |||||| ||||||||||    
T  7837737 attgaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcagcagttaact 7837656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 21956033 - 21956217
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct--tnnnnnnnnntggattttgggattgaaatggggt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||  |            ||||||| ||||||  || ||||     
T  21956033 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttaatgaaattttttattggatttggggatttgaaagggg- 21956131  T
Q  137 tggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
     |||||||||| ||||  |||||||||| ||||||||| ||||||  |||||||||| |||||||||||||||||| |||||||||    
T  21956132 aggaaatgaagttgatagagaaaatagtatgtagggggtgcaggtgactgtttcatctgatgaaacattttcctcgacagttaact 21956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 16444841 - 16444677
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |            ||||||| |||||| ||||| | |    
T  16444841 acgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaaaataaaggatttttggattggaatggagat 16444742  T
Q  138 g-gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaa 201  Q
    |  |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  16444741 gaaaaatgaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaa 16444677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 29929670 - 29929487
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |           ||||||| |||||||  || |   |    
T  29929670 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattggatttggggattg-gatagaagt 29929572  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    || |  |||| |||||| ||||||||||||||||||||||||||  |||||||||  |||||||||| || ||||||||||||||    
T  29929571 ggtatggaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcatatgatgaaacatatttctcggcagttaact 29929487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 29978824 - 29978641
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgct-tnnnnnnnnntggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |           ||||||| |||||||  || |   |    
T  29978824 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaaatattggatttggggattg-gatagaagt 29978726  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    || |  |||| |||||| ||||||||||||||||||||||||||  |||||||||  |||||||||| || ||||||||||||||    
T  29978725 ggtatggaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcatatgatgaaacatatttctcggcagttaact 29978641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 6505909 - 6505997
Alignment:
Q  143 tgaaggtgatgaagaaaatagtgtgtaggggg-agcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccgg 230  Q
    ||||| |||||| ||||||||| ||||||||| |||| || ||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  6505909 tgaagttgatgatgaaaatagtatgtaggggggagcatgtggctgtttcatctgatgaaacatattcctcggcagttaactgcagccgg 6505997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 9582741 - 9582690
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  9582741 acgtcaaaagtgtgttgatacctcctatgcttgatgcttcaatgattttgga 9582690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 6505805 - 6505858
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatc 92  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  6505805 acgtcaaatgtgtgttgatacctcctatgcttgacgcttgaatgattttggatc 6505858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 2743451 - 2743409
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  2743451 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 2743409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 13743346 - 13743304
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  13743346 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 13743304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 41137771 - 41137729
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  41137771 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 41137729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 50957686 - 50957728
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  50957686 ttttcctcggcagttaactgcagccggatttcaaattcctcgg 50957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 4002525 - 4002565
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4002525 ttttcctcggcagttaactgcagccggatttcaaattcctc 4002565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 9582659 - 9582607
Alignment:
Q  171 ggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactg 223  Q
    ||||||||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  9582659 ggggagcaggtggctgtttcatctgatgaaacatttttttcggcagttaactg 9582607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 29918282 - 29918353
Alignment:
Q  151 atgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| ||||||||||||||||||||||||||  |||||||||  ||  |||||| || ||||||||||||||    
T  29918282 atgatgaaaatagtgtgtagggggagcaggtgactgtttcatatgagaaaacatatttctcggcagttaact 29918353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 29967435 - 29967506
Alignment:
Q  151 atgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||| ||||||||||||||||||||||||||  |||||||||  ||  |||||| || ||||||||||||||    
T  29967435 atgatgaaaatagtgtgtagggggagcaggtgactgtttcatatgagaaaacatatttctcggcagttaact 29967506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 49219811 - 49219853
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  49219811 ttttcctcggcagttaactgcagccggatttctaattcctcgg 49219853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 42756212 - 42756171
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  42756212 ttttcctcggcagttaactgcaaccggatttttaattcctcg 42756171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 24700773 - 24700733
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  24700773 tttcctcgggagttaactgcaaccggatttctaattcctcg 24700733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 48250889 - 48250929
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  48250889 ttttcctcggcagttaactgcagccggaattcaaattcctc 48250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 49268865 - 49268905
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctc 244  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  49268865 ttttcctcggcagttaactgcaaccggatttttaattcctc 49268905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 4002797 - 4002762
Alignment:
Q  200 aacattttcctcggcagttaactgcaaccggatttc 235  Q
    |||||||||||||||||||||||||| |||||||||    
T  4002797 aacattttcctcggcagttaactgcagccggatttc 4002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 7841174 - 7841131
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    ||||||||||||||||| |||| || ||||||||||||||||||    
T  7841174 ttttcctcggcagttaaatgcagccagatttcaaattcctcggt 7841131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 11389573 - 11389647
Alignment:
Q  116 attttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttca 191  Q
    |||||| ||||||| ||| | ||||||||||| |||||||||||||||| ||||| ||||||| || | |||||||    
T  11389573 attttgagattgaa-tggaggtggaaatgaagttgatgaagaaaatagtatgtagagggagcaagtggttgtttca 11389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 46989600 - 46989557
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcggt 247  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  46989600 ttttcctcggcagttaactgcagccggaattcaaatttctcggt 46989557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 48888794 - 48888751
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  48888794 attttcctcggcagttaactgcagccggatttttaattcctcgg 48888751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 13747738 - 13747780
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||    
T  13747738 ttttcctcagcagttaactgcagccggatttcaaattcatcgg 13747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 14398584 - 14398546
Alignment:
Q  208 cctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  14398584 cctcggcagttaactgcagccggaattcaaattcctcgg 14398546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 14402990 - 14403032
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  14402990 ttttcctcggcagttaactaccgccggatttcaaattcctcgg 14403032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 19341614 - 19341656
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||    
T  19341614 ttttcctcggtagttaactgcagccggatttctaattcctcgg 19341656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 49196469 - 49196510
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcg 245  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  49196469 ttttcctcggtagttaactgcaaccggatttttaattcctcg 49196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 28611048 - 28611112
Alignment:
Q  158 aaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||||||||||||||  | ||||||| ||  ||||||||||  | ||||||||||||||    
T  28611048 aaatagtgtgtagggggagcatctggctgttttatttgatgaaacataattctcggcagttaact 28611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 36812890 - 36812846
Alignment:
Q  204 ttttcctcggcagttaactgcaaccgga-tttcaaattcctcggt 247  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||    
T  36812890 ttttcctcggtagttaactgcagccggattttcaaattcctcggt 36812846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 11547 - 11312
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         
T  11547 tcgaataaaatgcacaatacctgtttttgtacgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaa 11448  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| ||| | ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||    
T  11447 aaattggattttgggattgaa-tggaggtggaaatgaagttgatgaagaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaaca-tttc 11350  T
Q  209 ctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||| ||||||||||| ||||| ||||||||||||||    
T  11349 ctcggaagttaactgcagccggaattcaaattcctcgg 11312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 15975 - 16017
Alignment:
Q  204 ttttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  15975 ttttcctcggcagttaactgcagctggatttcaaattcctcgg 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 50319 - 50108
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||         
T  50319 tcgaataaaatgcacaatacctgtttttttacgtcaatagtgtgttgataccttctatgcttgacgcttgaatgattttggatcaaaaattgattaaaaa 50220  T
Q  109 nnnntggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttc 208  Q
        ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50219 aaa-tggattttgggattgaa-tggaagtggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcaaatgaaacattttc 50122  T
Q  209 ctcggcagttaact 222  Q
    ||||||||||||||    
T  50121 ctcggcagttaact 50108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 4230 - 4412
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||         | ||||||||| |||||| ||| | |    
T  4230 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaagaattgattaaaaaaatattggattttggaattgaa-tggagat 4328  T
Q  138 ggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    |||||||||| |||| ||||||||||| |||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||    
T  4329 ggaaatgaagttgatcaagaaaatagtttgtagggggagcaggtggttgtttcatctgatgaaaca-tttcctcggcagttaact 4412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 1132 - 918
Alignment:
Q  9 tcgaagaatatgcacaatacctgnnnnnnnacgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnn 108  Q
    ||||| || ||||||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||| |          
T  1132 tcgaataaaatgcacaatacctgtttttttacgtcaaatgtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgatggaaaa 1033  T
Q  109 nnnnt-ggattttgggattgaaatggggttggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattt 206  Q
        | ||||||| |||||| ||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  1032 aatattggatttttggattggaatggagatggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tt 934  T
Q  207 tcctcggcagttaact 222  Q
    ||||||||||||||||    
T  933 tcctcggcagttaact 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 15920 - 15715
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |          || |||| ||||||||| ||| | ||    
T  15920 acgtcaaaagtgtgttgatacctcttatgcttgatgcttgaatgattttggatcaagatttgatgaaaaaatattgaatttggggattgaa-tggaggtg 15822  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaaccggatttcaaa 238  Q
    | | ||||| |||||| ||||||||| ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||| |||  ||    
T  15821 gtattgaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcggcagttaactgcaaccggtttttgaa 15722  T
Q  239 ttcctcg 245  Q
    |||||||    
T  15721 ttcctcg 15715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 17180 - 17363
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |          | |||||||||||||| ||||| | |    
T  17180 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaggattgttggaaaaaatattggattttgggattggaatggagat 17279  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  17280 ggaaaatgaagttgatgaagaaaatagtgt-tagagggagcaggtggctgtttcatctgatgaaaca-tttcctcggcagttaact 17363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17372 - 17413
Alignment:
Q  205 tttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  17372 tttcctcggcagttaactgcagccggatttcaaattcctcgg 17413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 251 - 435
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnnt-ggattttgggattgaaatggggtt 137  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |          | ||| ||| |||||| ||||| |      
T  251 acgtcaaatgtgtgttgataccttctatgcttgatgcttgaatgattttggatcaaagattgatggaaaaaatattggaattttggattggaatggagaa 350  T
Q  138 ggaaa-tgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  351 ggaaaatgaagttgatgaagaaaatagtgtgtagggggagcaagtagctgtttcatctgatgaaaca-tttcctcggcagttaact 435  T

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Target: scaffold0340 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 1011 - 1193
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaaattgcttnnnnnnnnntggattttgggattgaaatggggttg 138  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| |          ||||||| ||||||||| ||| | ||    
T  1011 acgtcaaaagtgtgttgataccacctatacttgatgcttgaataattttggatcaaaatttgatgaaaaaatattggatttagggattgaa-tggaggtg 1109  T
Q  139 gaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaact 222  Q
    ||||||||| |||||| ||||||||| |   ||||||||| || ||| ||||||| |||||||||| |||||||||||||||||    
T  1110 gaaatgaagttgatgatgaaaatagtattatgggggagcatgtggctatttcatctgatgaaacatattcctcggcagttaact 1193  T

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Target: scaffold0794 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 5440 - 5332
Alignment:
Q  113 tggattttgggattgaaatggggttggaaatgaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcg 212  Q
    ||||||| ||||||||| ||| | ||| | ||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  5440 tggatttggggattgaa-tggaggtggtattgaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattttcctcg 5342  T
Q  213 gcagttaact 222  Q
    ||||||||||    
T  5341 gcagttaact 5332  T

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Target: scaffold0794; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 5489 - 5461
Alignment:
Q  66 tgcttgatgcttgaatgattttggatcaa 94  Q
    |||||||||||||||||||||||||||||    
T  5489 tgcttgatgcttgaatgattttggatcaa 5461  T

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Target: scaffold0360 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 7144 - 7199
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7144 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaa 7199  T

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Target: scaffold0057 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23072 - 23123
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23072 acgtcaaaagtgtgttgatacctcctatgcttgatgcttgaatgattttgga 23123  T

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Target: scaffold2089 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 287 - 357
Alignment:
Q  158 aaatagtgtgtagggg-gagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcaacc 228  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  287 aaatagtgtgtaggggggagcaggtggctgtttcatctgatgaaaca-tttcctcgacagttaactgcaacc 357  T

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Target: scaffold0388 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 11574 - 11629
Alignment:
Q  41 gtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaa 96  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||||    
T  11574 gtcaaaagtgtgttgatacctcgtatgcttgatgcttgaatgattttagagcaaaa 11629  T

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Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 689 - 746
Alignment:
Q  39 acgtcaatagtgtgttgatacctcctatgcttgatgcttgaatgattttggatcaaaa 96  Q
    ||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  689 acgtcaaaaatgtgttgatacctcttatgcctgatgcttgaatgattttggagcaaaa 746  T

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Target: scaffold0147; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 800 - 865
Alignment:
Q  149 tgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggc 214  Q
    |||||| |||||||||||||||||||||||||   |||||||||| |||||||||| || ||||||    
T  800 tgatgatgaaaatagtgtgtagggggagcaggggactgtttcatctgatgaaacatatttctcggc 865  T

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Target: scaffold0201 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 22457 - 22414
Alignment:
Q  203 attttcctcggcagttaactgcaaccggatttcaaattcctcgg 246  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  22457 attttcctcagcagttaactgcagccgaatttcaaattcctcgg 22414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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