View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_58 (Length: 250)
Name: NF19726_low_58
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 2175668 - 2175776
Alignment:
| Q |
116 |
tgtgataaccgtagatatcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctatcgcattatattggattt |
215 |
Q |
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| T |
2175668 |
tgtgatcaccgtagatatcatttgaaaatgagcggttcaaattgaattgaacttatgattgatcgaggtatttagaatcctatctcgttatattggattt |
2175767 |
T |
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| Q |
216 |
gctttctat |
224 |
Q |
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||||||||| |
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| T |
2175768 |
gctttctat |
2175776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 2175529 - 2175558
Alignment:
| Q |
10 |
aaaaatataagcatttgtgggttgaatgcg |
39 |
Q |
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| T |
2175529 |
aaaaatataagcatttgtgggttgaatgcg |
2175558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 18061418 - 18061353
Alignment:
| Q |
133 |
tcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctat |
198 |
Q |
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| T |
18061418 |
tcatttgaaaatgagcagttcagatcgaatcgaacttttgattgatccaggtacttggaatcctat |
18061353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 36319076 - 36319141
Alignment:
| Q |
133 |
tcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctat |
198 |
Q |
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|||||||||||||||| |||||||| |||| ||||| |||||||| |||||||| ||||||||| |
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| T |
36319076 |
tcatttgaaaatgagcagttcagatcgaatcaaacttttgattgatccaggtacttggaatcctat |
36319141 |
T |
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