View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_6 (Length: 690)
Name: NF19726_low_6
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_6 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 647; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Complemental strand, 48912016 - 48911342
Alignment:
| Q |
1 |
actcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48912016 |
actcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttactcagctgcttcgg |
48911917 |
T |
|
| Q |
101 |
tggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911916 |
tggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaata |
48911817 |
T |
|
| Q |
201 |
gcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
48911816 |
gcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctg |
48911717 |
T |
|
| Q |
301 |
gtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagagggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911716 |
gtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagagggg |
48911617 |
T |
|
| Q |
401 |
ttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagca |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911616 |
ttcgacgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagca |
48911517 |
T |
|
| Q |
501 |
ttggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911516 |
ttggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggta |
48911417 |
T |
|
| Q |
601 |
tgaagtatatattaagtggtttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttgg |
675 |
Q |
| |
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||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911416 |
tgaagtagatggtaagtgctttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttgg |
48911342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 432 - 589
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
432 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
531 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | || |||| || |||||| || |||||| ||||| ||||| ||||| |||||||| |||| | |
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| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
|
| Q |
532 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
589 |
Q |
| |
|
||| || | |||||||||| || || ||||||||||||||| |||||||||||||||| |
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|
| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 319
Target Start/End: Original strand, 48951927 - 48952063
Alignment:
| Q |
183 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
282 |
Q |
| |
|
|||||||||||||| || | ||| || |||||||||||||| | | ||| ||||| || ||||| ||||| || |||| | |||| || | | |||| |
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| T |
48951927 |
gattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaat |
48952026 |
T |
|
| Q |
283 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
319 |
Q |
| |
|
| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
48952027 |
ccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 607
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
478 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
577 |
Q |
| |
|
|||||||| |||||||| |||||| || | ||||||||||| || ||| |||| ||| | |||||||||| |||||||| |||| ||||||||| |
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|
| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
|
| Q |
578 |
gtggccaggtgctaagtaaggtatgaagta |
607 |
Q |
| |
|
||| || | ||||||||| || |||||||| |
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|
| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48965834 - 48965887
Alignment:
| Q |
1 |
actcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga |
54 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||| || ||| |||||||||| |
|
|
| T |
48965834 |
actcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga |
48965887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Complemental strand, 6182 - 5536
Alignment:
| Q |
1 |
actcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||||| | |||||||||||| || | ||||| ||||||||| |
|
|
| T |
6182 |
actcttcaccgtcaagttcagaaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcgg |
6083 |
T |
|
| Q |
101 |
tggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaata |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6082 |
cggagctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaatt |
5983 |
T |
|
| Q |
201 |
gcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctg |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| || || |||||||| | |
|
|
| T |
5982 |
gcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccg |
5883 |
T |
|
| Q |
301 |
gtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagagggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||| ||| || |||| ||| || || ||||||||||||| || | ||||| |
|
|
| T |
5882 |
gtgggtgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggct |
5783 |
T |
|
| Q |
401 |
ttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagca |
500 |
Q |
| |
|
|||||| ||||| |||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
5782 |
ttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagca |
5683 |
T |
|
| Q |
501 |
ttggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggta |
600 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| ||||||||||||| |
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|
| T |
5682 |
ttggagggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggta |
5583 |
T |
|
| Q |
601 |
tgaagtatatattaagtggtttctcttctccttcttccgtattcatc |
647 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
5582 |
tgaagtagatagtaagtgctttctcttctccttcttccatatccatc |
5536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 630
Target Start/End: Complemental strand, 10159 - 9553
Alignment:
| Q |
8 |
accgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgct |
107 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || | |||||||||||| |||| | | || || |||| | || ||||| |||||| || |||| | |
|
|
| T |
10159 |
accgtcaagttctacaaaattattgacaaggatcccttgacttttgaaaaccatctccaaacgctctcccaagatttcactcatctgcttaggcggtgtt |
10060 |
T |
|
| Q |
108 |
gcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaaca |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10059 |
gcattcatgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaaca |
9960 |
T |
|
| Q |
208 |
gagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtg |
307 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||| |
|
|
| T |
9959 |
gagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtg |
9860 |
T |
|
| Q |
308 |
ctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgaca |
407 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| ||| || |||||||| | ||| | || ||| |||| || |||| ||| ||| |
|
|
| T |
9859 |
ctgctccacgaagtgttggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttctaca |
9760 |
T |
|
| Q |
408 |
ccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagg |
507 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
9759 |
ccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttggaag |
9660 |
T |
|
| Q |
508 |
gtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagta |
607 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
9659 |
gtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaagta |
9576 |
T |
|
| Q |
608 |
tatattaagtggtttctcttctc |
630 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
9575 |
gattttaagtgctttctcttctc |
9553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
183 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
282 |
Q |
| |
|
|||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
|
|
| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
|
| Q |
283 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
319 |
Q |
| |
|
| || ||||||||||| ||||| | ||| |||||||| |
|
|
| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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