View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_61 (Length: 246)
Name: NF19726_low_61
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8707730 - 8707960
Alignment:
| Q |
1 |
taaggccatgtgatttctatctagtgtatctcatcatcatgatgaaattcttgacacagaaaaagtccagaagcagtgttattggttttgaagaaggggg |
100 |
Q |
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| T |
8707730 |
taaggccatgtgatttctatctagtgtatctcatcatcatgatgaaattcttgacacagaaaaagtccagaagcagtgttattggttttgaagaaggggg |
8707829 |
T |
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| Q |
101 |
agatgaagaagtttccttggtgccagagtagtgattcttggaatcttataaagtattctaactgtcagaaagtgtttttcagcatgaattgcattaaaga |
200 |
Q |
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| T |
8707830 |
agatgaagaagtttccttggtgccagagtagtgattcttggaatcttataaagtattctaactgtcggaaagtgtttttcagcatgaattgcattaaaga |
8707929 |
T |
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| Q |
201 |
aagagtatatgattatctgtgacatcattat |
231 |
Q |
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| T |
8707930 |
aagagtatatgattatctgtgacatcattat |
8707960 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 2846514 - 2846628
Alignment:
| Q |
84 |
ggttttgaagaagggggagatgaagaagtttccttggtgccagagtagtgattcttggaatcttataaagtattctaactgtcagaaagtgtttttcagc |
183 |
Q |
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| T |
2846514 |
ggttttgaagaagtgtaggaggaagaagtgtcattggtgtcagagtagtgattctttgaatttgataaagtgtaacaactgccagaaagagtttttctgc |
2846613 |
T |
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| Q |
184 |
atgaattgcattaaa |
198 |
Q |
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| T |
2846614 |
atggattgcattaaa |
2846628 |
T |
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