View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_7 (Length: 629)
Name: NF19726_low_7
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Complemental strand, 29662043 - 29661438
Alignment:
| Q |
8 |
agagaagaataatagtagaggcactactagtagaggtactactagtggtaaaggcactactggtggtggcaagaactctgtggtagttccacaaaagaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29662043 |
agagaagaataatagtagaggcactactagtagaggtactactagtggtaaaggcactactagtggtggcaagaactctgttgtagttccacaaaagaag |
29661944 |
T |
|
| Q |
108 |
aagggtggttttggaggattttttaacaaggattaattgaagaaatgttcatgcaagtaccttttccaactgcatgtatgttatatatgtttctgtttat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29661943 |
aagggtggttttggaggattttttaacaaggattaattgaagaaatgttcatgcaagtaccttttccaactgcatgtatgttatatatgtttctgtttat |
29661844 |
T |
|
| Q |
208 |
ttagattttaatctgttaaacattatgaggactataatatgttgtttgtttttctggtttatatatatttcaatttatagaacaaaccaattgattcatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29661843 |
ttagattttaatctgttaaacattatgaggactataatatgttgtttgtttttctggtttatatatatttcaatttatagaacaaaccaattgattcatt |
29661744 |
T |
|
| Q |
308 |
ttggttcagtagcatcgacataaattaaaggtgtgtctggtgtccaatgcatgtgactactacatagtagaatcacttatattttttcaaattattagca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29661743 |
ttggttcagtagcatcgacataaattaaaggtgtgtctggtgtccaatgcatgtggctactacatagtagaatcacttatattttttcaaattattagca |
29661644 |
T |
|
| Q |
408 |
atgtttacgtgtcaatgtttgttttatgtgtgcatctgtatcagtgcctcgtagccgctaatcaatcagattcgatctacaatttacacaatcttgcttt |
507 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29661643 |
atgtttacgtgtcaatgttggttttatgtgtgcatctgtatcagtgcctcgtagccgctaatcaatcagattcgatctacaatttacacaatcttgcttt |
29661544 |
T |
|
| Q |
508 |
atatggtggttttagtcctggtttttgaagtcatggaaattcattctaaatgaaccttgttaggtcatgtaatgagctaggcagt--taatgttgttggt |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29661543 |
atatggtggttttagtcctggtttttgaagtcatggaaattcattctaaatgaaccttgttaggtcatgtaatgagctaggcagttataatgttgttggt |
29661444 |
T |
|
| Q |
606 |
ctaagt |
611 |
Q |
| |
|
|||||| |
|
|
| T |
29661443 |
ctaagt |
29661438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 12224244 - 12224204
Alignment:
| Q |
389 |
ttttttcaaattattagcaatgtttacgtgtcaatgtttgt |
429 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12224244 |
ttttttcaaattattagctatgttggcgtgtcaatgtttgt |
12224204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University