View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_high_13 (Length: 402)
Name: NF19727_high_13
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 236 - 384
Target Start/End: Original strand, 37375555 - 37375703
Alignment:
| Q |
236 |
ttcattcatatcttctttcttcgcggaagaaaacaaccttcttattccaaacacaatacattttcaatacaaaacaactgaagagctaaagtgtgattac |
335 |
Q |
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| T |
37375555 |
ttcattcatatattctttcttcgcggaggaaaacaaccctcttattccaaacacaatacattttcaatacaaaacaactgaagagctaaagtgtgattac |
37375654 |
T |
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| Q |
336 |
caagatagattcaacttcatttactgaattatgaaaaccttcgtcttta |
384 |
Q |
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| T |
37375655 |
caagatagattcaacttcatttactgaattatgaaaaccttcgtcttta |
37375703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 37374712 - 37374799
Alignment:
| Q |
151 |
ttttcatgtccacatgtctaatttatttgaaagttaaatatacgaaggcccaaactaagacaatagtgtcaactctaaccatcttttc |
238 |
Q |
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| T |
37374712 |
ttttcatgtccacctgtctaatttatttgaaggtgaaatatatgaaggcccaaactaaaacaatagtgtcaactctaaccatcttttc |
37374799 |
T |
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