View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19727_high_17 (Length: 369)

Name: NF19727_high_17
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19727_high_17
NF19727_high_17
[»] chr7 (8 HSPs)
chr7 (277-350)||(21221011-21221084)
chr7 (185-280)||(21218711-21218806)
chr7 (16-89)||(21216523-21216596)
chr7 (185-280)||(35205927-35206022)
chr7 (185-247)||(13888097-13888159)
chr7 (240-280)||(21220957-21220997)
chr7 (197-247)||(7328183-7328233)
chr7 (187-228)||(20414906-20414947)
[»] scaffold0128 (1 HSPs)
scaffold0128 (185-256)||(4133-4204)
[»] scaffold0064 (1 HSPs)
scaffold0064 (185-247)||(24210-24272)
[»] chr5 (1 HSPs)
chr5 (185-247)||(42298116-42298178)
[»] chr4 (1 HSPs)
chr4 (186-247)||(53774845-53774906)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 21221011 - 21221084
Alignment:
Q  277 aacacacaaagatttccccatataatgacattctcagaacttgtagggggaagcatttgtgtgtatgtctctgt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21221011 aacacacaaagatttccccatataatgacattctcagaacttgtagggggaagcatttgtgtgtatgtctctgt 21221084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 21218711 - 21218806
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataaccaagtcggttccattgtaattgtcataaaaaca 280  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| || ||||||||| ||| || |||||||||    
T  21218711 gctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaaca 21218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 21216523 - 21216596
Alignment:
Q  16 atgtaactccaaaaagagtctctttcatcctatcattatgacatgcaccatcaataacgttgaatttgctcgga 89  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||| ||||||    
T  21216523 atgtagctccaaaaagagtctctttcatcctatcagcatgacatgcgccatcaataacgtcgaatttactcgga 21216596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 35205927 - 35206022
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataaccaagtcggttccattgtaattgtcataaaaaca 280  Q
    ||||||||| |||||||||||||||||| | |||| ||||||||||||||  | ||||||||| || || ||||||||| |||  | |||||||||    
T  35205927 gctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaaca 35206022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 13888097 - 13888159
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataac 247  Q
    ||||||||| |||||||||||||||||| |||| |||||||||| ||||| || |||||||||    
T  13888097 gctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataac 13888159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 21220957 - 21220997
Alignment:
Q  240 catataaccaagtcggttccattgtaattgtcataaaaaca 280  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  21220957 catataaccaagttggttccattgaaattgtcataaaaaca 21220997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 7328233 - 7328183
Alignment:
Q  197 gaattgagtccaagacctttcatctccaaattctgtcagttgccatataac 247  Q
    ||||| |||||||||||| |||||||||||||||||||  | |||||||||    
T  7328233 gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac 7328183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 20414947 - 20414906
Alignment:
Q  187 taaatttgaggaattgagtccaagacctttcatctccaaatt 228  Q
    ||||||| |||||||||||||||||| | |||||||||||||    
T  20414947 taaatttaaggaattgagtccaagacttgtcatctccaaatt 20414906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 4204 - 4133
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataaccaagtcggt 256  Q
    ||||| |||| ||||||||||||||||  |||||| ||||||||||||||  | |||||||||||| |||||    
T  4204 gctaactttgtggaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggt 4133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 24272 - 24210
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataac 247  Q
    ||||||||| ||||||||||| |||||| ||||||||||| |||||||||  | |||||||||    
T  24272 gctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataac 24210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 42298178 - 42298116
Alignment:
Q  185 gctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataac 247  Q
    ||||| |||| ||||||||||||||||  ||||||||||||||||| |||  | |||||||||    
T  42298178 gctaactttgtggaattgagtccaagaattttcatctccaaattctatcatcttccatataac 42298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 53774906 - 53774845
Alignment:
Q  186 ctaaatttgaggaattgagtccaagacctttcatctccaaattctgtcagttgccatataac 247  Q
    |||| ||| ||||||||||||||||||  |||| ||||||||||  ||| ||||||||||||    
T  53774906 ctaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataac 53774845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University