View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_high_27 (Length: 275)
Name: NF19727_high_27
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37633538 - 37633780
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37633538 |
attgggaagaagaatttaacaaatgttaatattaattaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
37633637 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37633638 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacatagagagaaatgagtaatttcaaacaacactctaaacgt |
37633737 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37633738 |
attttggtggaggccttggcatatccttgacgataccgcaaac |
37633780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37636453 - 37636694
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37636453 |
attgggaagaagaatttaataaatgttaatatcaattaaggggaaaattgaataattaaatatagtaaaagg-ttgattatatataaatcaaccaataga |
37636551 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
37636552 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacatagagagaaataagtaatttcaaacaacactctaaacgt |
37636651 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37636652 |
attttggtggaggccttggcatatccttgacgataccgcaaac |
37636694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37639367 - 37639608
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37639367 |
attgggaagaagaatttaataaatgttaatatcaattaaggggaaaattgaataattaaatatagtaaaagg-ttgattatatataaatcaaccaataga |
37639465 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37639466 |
taacatacaatataatgaatctctatgacttagtgttaacaatcacatgaagctcacgacatagagagaaatgagtaatttcaaacaacactctaaacgt |
37639565 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37639566 |
attttggtggaggccttggcatatccttgacgataccgcaaac |
37639608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37644741 - 37644982
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37644741 |
attgggaagaagaatttaataaatgttaaaatcaattaaggggaaaattgaataattaaatatagtaaaagg-ttgattatatataaatcaaccaataga |
37644839 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
37644840 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacatagagagaaataagtaatttcaaacaacactctaaacgt |
37644939 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37644940 |
attttggtggaggccttggcatatccttgacgataccgcaaac |
37644982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37647654 - 37647895
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
37647654 |
attgggaagaagaatttaataaatgttaatatcaattaaggggaaaattgaataattaaatatagtaaaagg-tcgattatatataaatcaaccaataga |
37647752 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37647753 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacatagagagaaatgagtaatttcaaacaacactctaaacgt |
37647852 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
37647853 |
attttggtggaggccttggcatatccttaacgataccgcaaac |
37647895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37650566 - 37650807
Alignment:
| Q |
16 |
attgggaagaagaatttaacaaatgttaatatcaataaaggggataattgaataattaaatatagtaagagggttgattatatataaatcaaccaataga |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
37650566 |
attgggaagaagaatttaataaatgttaatatcaattaaggggaaaattgaataattaaatatagtaaaagg-tcgattatatataaatcaaccaataga |
37650664 |
T |
|
| Q |
116 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacataaagagaaatgagtaatttcaaacaacactctaaacgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
37650665 |
taacatacaatataatgaatctctatgacttagtgctaacaatcacatgaagctcacgacatagagagaaatgagtaatttcaaacaacgctctaaacgt |
37650764 |
T |
|
| Q |
216 |
attgtggtggaggccttggcatatccttgacgataccgcaaac |
258 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37650765 |
attttggtggaggccttggcatatccttgacgataccgcaaac |
37650807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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