View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_high_3 (Length: 575)
Name: NF19727_high_3
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 20371010 - 20370449
Alignment:
| Q |
1 |
tgtcacattagtccaacccctttgatgcccaacaaagacattatgcatagctctgtctagtttacaaacaacccacatatgaatagaacgcgagaaccca |
100 |
Q |
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| T |
20371010 |
tgtcacattagtccaacccctttgatgcccaacaaagacattatgcatagctctgtctagtttaccaacaacccacatatgaatagaacgcgagaaccca |
20370911 |
T |
|
| Q |
101 |
aaaacttgaactctagcatttctatcatgggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcccacatactgcaactgt |
200 |
Q |
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| T |
20370910 |
aaaacttgaactctagcatttctatcatgggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcc-acatacaacaactgt |
20370812 |
T |
|
| Q |
201 |
tttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtctccttac |
300 |
Q |
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| T |
20370811 |
tttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtttccttac |
20370712 |
T |
|
| Q |
301 |
gcgtggaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgtttctgcttcagacgtcatcgcgatggctctcagatcgac |
400 |
Q |
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| T |
20370711 |
gcgtgaaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgtttccgcttcaaacgtcatcgcgatggctctcagaccgac |
20370612 |
T |
|
| Q |
401 |
tccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgccaataattaatttcattttcgtaatcctcaagattccat |
500 |
Q |
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| T |
20370611 |
cccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgccaataattaatttcatttttgtaatcctcaagattccat |
20370512 |
T |
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| Q |
501 |
ctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataatc |
563 |
Q |
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| T |
20370511 |
ctttcacaaatatatatcaattcaaaataacaaaaaaatcggatacaagtattcaggataatc |
20370449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 465 - 562
Target Start/End: Complemental strand, 20390443 - 20390346
Alignment:
| Q |
465 |
taattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataat |
562 |
Q |
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| T |
20390443 |
taattaatttcattttcgtaatcctttagattccatctttcactaatatatatcaattcaaaataacaagaaaatcggatacaactattcacaataat |
20390346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 517
Target Start/End: Complemental strand, 20377962 - 20377911
Alignment:
| Q |
466 |
aattaatttcattttcgtaatcctcaagattccatctttcacaaatatatat |
517 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
20377962 |
aattaatttcattttggtaatcatcaagattccatctttcactaatatatat |
20377911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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