View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19727_high_30 (Length: 262)

Name: NF19727_high_30
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19727_high_30
NF19727_high_30
[»] chr3 (3 HSPs)
chr3 (14-227)||(24889605-24889824)
chr3 (179-216)||(14155491-14155528)
chr3 (176-216)||(33364809-33364849)
[»] chr7 (1 HSPs)
chr7 (178-211)||(9985684-9985717)
[»] chr8 (1 HSPs)
chr8 (179-219)||(3394344-3394384)
[»] chr5 (1 HSPs)
chr5 (176-216)||(22432352-22432392)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 24889824 - 24889605
Alignment:
Q  14 ttctttggtcctaagattcattgaataaatatatctaatctata-----cgaaattaattatttatgatgtatttcatcagctaaaaaatatttattgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24889824 ttctttggtcctaagattcattgaataaatatatctaatctatattatacgaaattaattatttatgatgtatttgatccgctaaaaaatatttattgaa 24889725  T
Q  109 tagaataacataagacaaaacaccataatttaagaaataagataaattttatgtttgttg-nnnnnnntgctattttgatattttatacaacttgtactt 207  Q
    ||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||||||| || ||    
T  24889724 tagaacagcataagacaaaacatcataatttaagaaataagacaaattttatgtttgttgaaaaaaaatgctattttgatattttatacaacttatattt 24889625  T
Q  208 gagaaaaaattaatgtaatt 227  Q
    ||||||||| ||||||||||    
T  24889624 gagaaaaaactaatgtaatt 24889605  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 14155528 - 14155491
Alignment:
Q  179 tattttgatattttatacaacttgtacttgagaaaaaa 216  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  14155528 tattttgatattttagacaacttgtacttgagacaaaa 14155491  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 33364849 - 33364809
Alignment:
Q  176 tgctattttgatattttatacaacttgtacttgagaaaaaa 216  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  33364849 tgctattttgatattttagacaacttgtacgtgagacaaaa 33364809  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 9985717 - 9985684
Alignment:
Q  178 ctattttgatattttatacaacttgtacttgaga 211  Q
    |||||||||||||||| |||||||||||||||||    
T  9985717 ctattttgatattttagacaacttgtacttgaga 9985684  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 3394344 - 3394384
Alignment:
Q  179 tattttgatattttatacaacttgtacttgagaaaaaatta 219  Q
    ||||||| || |||| |||||||||||||||||||||||||    
T  3394344 tattttggtaatttagacaacttgtacttgagaaaaaatta 3394384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 22432392 - 22432352
Alignment:
Q  176 tgctattttgatattttatacaacttgtacttgagaaaaaa 216  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  22432392 tgctattttggtattttagacaacttgtacttgagacaaaa 22432352  T

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