View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_high_40 (Length: 223)
Name: NF19727_high_40
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 35874906 - 35875102
Alignment:
| Q |
11 |
gtccaagaaaatatttccacgatagaaaactcggattacaagctttcttgttacaagataatatctttcaatctcacccgactcagatggtatacaatat |
110 |
Q |
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| T |
35874906 |
gtccaataaaatatttccacgatagaaaactcggattacaagctttcttgttacaagagaatatctttcaatctcacccgactcagatggtatacaatat |
35875005 |
T |
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| Q |
111 |
ctctcaactttcatcaaactatgattgaattaagaatctctttctcttaaaaatggtatacgttatctcactatcactcttggattccttctgttgg |
207 |
Q |
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| T |
35875006 |
ctctcaactttcatcaaactatgattgaattaagaatctctttctcttaaagatggtatacattatctcactatcactcttggattccttctgttgg |
35875102 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 37123827 - 37123752
Alignment:
| Q |
62 |
tacaagataatatctttcaatctcacccgactcagatggtataca--atatctctcaactttcatcaaactatgat |
135 |
Q |
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||||||| |||||||||||||||||||||||| |||| | ||| |||| |||||||| |||| |||||||||| |
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| T |
37123827 |
tacaagaggatatctttcaatctcacccgactcggatgaaacacaatatatttctcaactctcattaaactatgat |
37123752 |
T |
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