View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_high_42 (Length: 212)
Name: NF19727_high_42
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 40176214 - 40176059
Alignment:
| Q |
17 |
aactcatgttcggcacatttcgagagataacttttatacactagaataataagtagcattttcttcaactcttgaacttcaacaaatcaacgtcaaataa |
116 |
Q |
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| T |
40176214 |
aactcatgttcggtacatttggagagataacttttatacaccagaatgatagctagcaattcattcaactcttgaacttcaacaaatcaacgtcaaataa |
40176115 |
T |
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| Q |
117 |
attgtttttgttgacacatttcgtctacaacactgcaaataagtgtgatatttcac |
172 |
Q |
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| T |
40176114 |
attgtttttgttgacacatttcgtctacaacactacaaataagtgtgacatttcac |
40176059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 40177556 - 40177401
Alignment:
| Q |
17 |
aactcatgttcggcacatttcgagagataacttttatacactagaataataagtagcattttcttcaactcttgaacttcaacaaatcaacgtcaaataa |
116 |
Q |
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||||||||||||| |||||| |||||||||||||||||||| ||||| ||| ||| | || ||||||||||||||||||||||||||||||||||||| |
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| T |
40177556 |
aactcatgttcggtacatttggagagataacttttatacaccagaatgatagctagtaattcattcaactcttgaacttcaacaaatcaacgtcaaataa |
40177457 |
T |
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| Q |
117 |
attgtttttgttgacacatttcgtctacaacactgcaaataagtgtgatatttcac |
172 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
40177456 |
attgtttttgttgacacatttcgtctacaacactacaaataagtgtgacatttcac |
40177401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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