View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_1 (Length: 615)
Name: NF19727_low_1
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 176 - 615
Target Start/End: Complemental strand, 15403790 - 15403357
Alignment:
| Q |
176 |
ggacaaatggagcatagtcaattgcagacgatctaatggattttggatagactctgatatctcaatagataccggataagcaaatgtgaccacacaattt |
275 |
Q |
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| T |
15403790 |
ggacaaatggagcatagccaattgcagacgatctaatagattttggatagactctgatatctcaatagataccggataagaaaatgtaaccacacaattt |
15403691 |
T |
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| Q |
276 |
atttcacaactttagtgcttcaataatctcacacatccaaagaactttatataaccacatgactagacctagacctatatcatagaggctctactaattg |
375 |
Q |
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| T |
15403690 |
atttcaca------gtgcttcaataatctcacacatccaaagaactgtatatcaccacatgactagacctagacctatatcatagaggctctactaattg |
15403597 |
T |
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| Q |
376 |
agacacaaaacagacaaacctggtaagcctaactaggatattttttgcaatcattaaggaaatttggtattaaattgcattctttcaactaaggtccaca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15403596 |
agacacaaaacagacaaacctggtaagcctaactaggatattttttgcaatcattaaggaaatttggtattaaattgcattctttcaactaagggccaca |
15403497 |
T |
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| Q |
476 |
agtcaaatttgtaataaatccttgaaaggcaaaaggaaggtccaattataaaataatggcacatgcaattgggaccgtattgtgacttatcaataaacat |
575 |
Q |
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| T |
15403496 |
agtcaaatttgtaataaatccttgaaaggcaaaaggaaggtccaattataaaataatggcacatgcaatagggaccgtattgtgacttatcaataaacat |
15403397 |
T |
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| Q |
576 |
ttatgatattcttcttaattatttatgttacttgatttct |
615 |
Q |
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| T |
15403396 |
ttatgatattcttcttaattatttatgttacttgatttct |
15403357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 15403894 - 15403789
Alignment:
| Q |
18 |
gtatgatatcaaacgttgcctaacactcacgacaccgatacgttggtgtttactcatacaacttgatttgagccctactcaaggcatacaaaattgattt |
117 |
Q |
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| T |
15403894 |
gtatgatatcaaacgttgcctaacactcacgacaccgatacgttggtgtttactcatacaacttgatttgagccctactcaaggcatacaaaattgattt |
15403795 |
T |
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| Q |
118 |
ctaagg |
123 |
Q |
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|||||| |
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| T |
15403794 |
ctaagg |
15403789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 32028534 - 32028498
Alignment:
| Q |
354 |
atcatagaggctctactaattgagacacaaaacagac |
390 |
Q |
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| T |
32028534 |
atcatagaggctatactaattgagacacaaaatagac |
32028498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 13858665 - 13858701
Alignment:
| Q |
354 |
atcatagaggctctactaattgagacacaaaacagac |
390 |
Q |
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| T |
13858665 |
atcatagaggctatactaattgagacacaaaatagac |
13858701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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