View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_10 (Length: 482)
Name: NF19727_low_10
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 252 - 476
Target Start/End: Original strand, 409439 - 409663
Alignment:
| Q |
252 |
gatcttggtctccgagaaactcggagaagcagggctacaagtgttaagacaattaggacatgtggaatgtgcttatgatctttcaccagaagacctatgc |
351 |
Q |
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| T |
409439 |
gatcttggtctccgagaaactaggagaagcagggctacaagtgttaagacaattaggaaatgtggaatgtgcatatgatctttcaccagaagacctatgc |
409538 |
T |
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| Q |
352 |
aagaagatctcaagctgtgatgctttgattgtgagaagcggtacgaaagttacaaggcaagtgtttgaagcaggaaaaggaaagttgaaagttgttggta |
451 |
Q |
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| T |
409539 |
aagaagatctcaagctgtgatgctttgattgtgagaagcggtacgaaagttacaaggaaagtgtttgaagcagggaaaggaaagttgaaagttgttggta |
409638 |
T |
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| Q |
452 |
gagctggtgttgggattgatgatgt |
476 |
Q |
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| T |
409639 |
gagctggtgttgggattgataatgt |
409663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 409280 - 409369
Alignment:
| Q |
84 |
caactccaacacttttggaaccatacccaacaacattaaactctctcatgctaactctcaacaacgttgttttgtggtcaacagtgtttt |
173 |
Q |
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| T |
409280 |
caactccaacacttttggaatcatacccaacaacattaaactctctcatgctaactctcaacaacgttgttttatggtcaacagtgtttt |
409369 |
T |
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