View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_11 (Length: 467)
Name: NF19727_low_11
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 48 - 455
Target Start/End: Original strand, 29089220 - 29089629
Alignment:
| Q |
48 |
atcttatcttatataagtaaatggagtattagaagtgatgtgaatttgtgaaatgtattattccctctcaaatggtggggcctcggctgaaacaagcata |
147 |
Q |
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| T |
29089220 |
atcttatcttatataagtaaatggagtattagaagtgatgtgaatttgtgaaatgtaatattccctctcaaatggtgggacctcggctgaaacaagcata |
29089319 |
T |
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| Q |
148 |
gcggtagaggagcaaattctttcaatgttagccaatatggctaagcaaaagttgaagcaaaataa---agaaact-atatgccacaaaagatcaaatgtc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
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| T |
29089320 |
gcggtagaggagcaaattctttcaatgttagccaatatggctaagcaaaagttgaagcaaaataaaagaaaaactaatatgccacaaaagatcaaatgtc |
29089419 |
T |
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| Q |
244 |
attttcttttggtactaatggatctcnnnnnnnnnnnnnnnntgtttc-tttttatcaaattgtgtctcaatgcaatgatgctgatttttagaagctatg |
342 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29089420 |
attttcttttggtactaatggatctc---caaaaaaaaaatatgtttcttttttatcaaattgtgtctcaatgcaatgatgctgatttttagaagctatg |
29089516 |
T |
|
| Q |
343 |
aaatgaaacttttatttcattaatccgtgaaatgggctatttcacaaacacataagatttcttctacacatttacactcaaaggtaattaacatggaaga |
442 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29089517 |
aaataaaacttttatttcattaatccgtgaaatgggctatttcacaaacacataagatttcttctacacatatacactcaaaggtaattaacatggaaga |
29089616 |
T |
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| Q |
443 |
taaggtatttgtg |
455 |
Q |
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| T |
29089617 |
taaggtatttgtg |
29089629 |
T |
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