View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_15 (Length: 396)
Name: NF19727_low_15
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 5534446 - 5534823
Alignment:
| Q |
1 |
aaaatgatattggggtcgctttatttggatacaaattagaataattgttgatttagataattatttaaacttgaggatcgggtatagtctctagattaat |
100 |
Q |
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| T |
5534446 |
aaaatgatattggggtcgctttatttggatacaaattagaataattgttcatttagagaattatttaaacttgaggatcgggtatagtctctagattaat |
5534545 |
T |
|
| Q |
101 |
tgctatctttaagacttgatattaaggagaggtctatatccttagcaaacgttattccggttaaacatacggtaaaaacttaacccgtaaacttaaatat |
200 |
Q |
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| T |
5534546 |
tgctatctttaagacttgatattaaggagaggtctatatccttagcaaacgttattccggttaaacatacggtaaaaacttaacccgtaaacttaaatat |
5534645 |
T |
|
| Q |
201 |
ccgtgtttttgtatatgttgacgaagataataaaaacatctttgaaagctcgttttttaagttgacacatcataatggatgtgagaccaatgatactttg |
300 |
Q |
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| T |
5534646 |
ccgtgtttttgtacatgttgacgaagataataaaaacatctttggaagctc-atttttaacttgacacatcataatggatgtgagaccaatgatactttg |
5534744 |
T |
|
| Q |
301 |
agtaaacnnnnnnnntatggaaggttcatagaagggctaagaagggtagtgaagtggtagagagaagttagttggcagtg |
380 |
Q |
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| T |
5534745 |
agtaaac-aaaaaaatatggaaggttcatagaagggctaagaagggtagtgaagtggtagagagaagttagttggcagtg |
5534823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 35198799 - 35198759
Alignment:
| Q |
203 |
gtgtttttgtatatgttgacgaagataataaaaacatcttt |
243 |
Q |
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| T |
35198799 |
gtgtttttgtacatgttgacgaagataataaaaacatcttt |
35198759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19234254 - 19234294
Alignment:
| Q |
203 |
gtgtttttgtatatgttgacgaagataataaaaacatcttt |
243 |
Q |
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| T |
19234254 |
gtgtttttgtacaagttgacgaagataataaaaacatcttt |
19234294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 19235838 - 19235871
Alignment:
| Q |
203 |
gtgtttttgtatatgttgacgaagataataaaaa |
236 |
Q |
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| T |
19235838 |
gtgtttttgtacatgttgacgaagataataaaaa |
19235871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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