View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_16 (Length: 389)
Name: NF19727_low_16
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 37960684 - 37960305
Alignment:
| Q |
1 |
gatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960684 |
gatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaa |
37960585 |
T |
|
| Q |
101 |
aaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37960584 |
aaacttattttggaaattgtcttgcatcttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcga |
37960485 |
T |
|
| Q |
201 |
aaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtg |
300 |
Q |
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| T |
37960484 |
aaagaagataagacatttaaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtg |
37960385 |
T |
|
| Q |
301 |
gttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
380 |
Q |
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| T |
37960384 |
gttgctggttcaccgaaattggctgtttatgagacagattttgggtgggggaagcctaagaaatctgatgctgttcatct |
37960305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 263 - 380
Target Start/End: Complemental strand, 37954613 - 37954496
Alignment:
| Q |
263 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
362 |
Q |
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||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
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| Q |
363 |
atctgatgcagttcatct |
380 |
Q |
| |
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|||||||||||||||||| |
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| T |
37954513 |
atctgatgcagttcatct |
37954496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 374
Target Start/End: Original strand, 37907422 - 37907731
Alignment:
| Q |
62 |
ttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaat |
161 |
Q |
| |
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|||||||||||||||| | |||||| |||||| | ||| ||||||||||||||||| |||| ||||||| |||| |||||| || | ||||||| | |
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| T |
37907422 |
ttgcagattgtcgtgaccgttctgaattttcattagctaaatcttattttggaaattgtgttgcctcttataacgtggttgtaaaaaggggtgagttagt |
37907521 |
T |
|
| Q |
162 |
tggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgat |
261 |
Q |
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|| |||| |||| |||||| | || || || |||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||| |
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| T |
37907522 |
tgaaaaagatggtattgttgcagc---aaatgctatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgat |
37907618 |
T |
|
| Q |
262 |
tatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaaga |
361 |
Q |
| |
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|||| |||| | | |||||||||||| || || ||||||||||| ||||| ||| | | ||||| ||| || |||||||||||||| || || |||| |
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| T |
37907619 |
tatatggaattattaaaacctggtaactcatttgtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaaga |
37907718 |
T |
|
| Q |
362 |
aatctgatgcagt |
374 |
Q |
| |
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||||||||||||| |
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| T |
37907719 |
aatctgatgcagt |
37907731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 370
Target Start/End: Original strand, 37915566 - 37915880
Alignment:
| Q |
56 |
tgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatga |
155 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| |||||| | ||||||||||||||||| |||||||| ||||||||||| | |||||| || | ||| |
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| T |
37915566 |
tgttttttgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtga |
37915665 |
T |
|
| Q |
156 |
gttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatg |
255 |
Q |
| |
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|||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| |||||| |
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| T |
37915666 |
gttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttgatg |
37915765 |
T |
|
| Q |
256 |
tctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagc |
355 |
Q |
| |
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|||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| || | |
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| T |
37915766 |
cctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaaaac |
37915865 |
T |
|
| Q |
356 |
ctaagaaatctgatg |
370 |
Q |
| |
|
| |||||||| |||| |
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| T |
37915866 |
caaagaaatccgatg |
37915880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 380
Target Start/End: Original strand, 3783688 - 3784035
Alignment:
| Q |
36 |
tgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatact |
135 |
Q |
| |
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|||||||| |||||||| || |||| |||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||||| | | | | |
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| T |
3783688 |
tgatgatctatgctacttggtatttcatgcagattgtcgtgatagtcctgaaatttcattacccaaaaattattttggaaattgtcttgccagtaaaatt |
3783787 |
T |
|
| Q |
136 |
gtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagag---tcatgctt |
232 |
Q |
| |
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|||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| ||||| | |||||| |
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| T |
3783788 |
gtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgctt |
3783887 |
T |
|
| Q |
233 |
tgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatga |
332 |
Q |
| |
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||||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | ||||||||| |
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| T |
3783888 |
tgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatga |
3783987 |
T |
|
| Q |
333 |
tacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
380 |
Q |
| |
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|| || || ||||||||||||||||| |||||||||||||||||||| |
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| T |
3783988 |
gactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatct |
3784035 |
T |
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