View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19727_low_17 (Length: 383)

Name: NF19727_low_17
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19727_low_17
NF19727_low_17
[»] chr5 (3 HSPs)
chr5 (1-368)||(25523389-25523756)
chr5 (111-237)||(7312268-7312394)
chr5 (1-30)||(32639964-32639993)
[»] chr1 (3 HSPs)
chr1 (1-368)||(36613166-36613533)
chr1 (1-368)||(7674912-7675278)
chr1 (1-233)||(39222032-39222261)
[»] chr4 (3 HSPs)
chr4 (1-368)||(8156190-8156557)
chr4 (274-368)||(29981745-29981839)
chr4 (87-153)||(12129955-12130021)
[»] chr2 (2 HSPs)
chr2 (1-238)||(28618625-28618858)
chr2 (182-236)||(7247397-7247451)
[»] chr3 (2 HSPs)
chr3 (1-175)||(17776009-17776192)
chr3 (1-175)||(19077310-19077493)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 25523389 - 25523756
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25523389 atggcttcttcttcttcctcttgatttcaatccctaaatccattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaacccatt 25523488  T
Q  101 ccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaagacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25523489 ccagattcaccaactcaagagcctaatttcattttcattctcaaatctccttttcaccatgaaaatttcttaaaccaccacaaactcacgttaaagacta 25523588  T
Q  201 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25523589 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 25523688  T
Q  301 acgaacattgacactacttaaatgtccataagctttaaatgcaattaccatttggtctttgttgtcat 368  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  25523689 acgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcat 25523756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 7312394 - 7312268
Alignment:
Q  111 caactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaagactatctcttcctc 210  Q
    |||||||||| ||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  7312394 caactcaagaccctaatttcattttcattcctaaatctccttttcaccatgaaaattccttaaaccaccacaaactcacgacaaagactatctcttcctc 7312295  T
Q  211 tctaaacaagaattcattcattccata 237  Q
    |||||||||||||||||||||||||||    
T  7312294 tctaaacaagaattcattcattccata 7312268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32639964 - 32639993
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  32639964 atggcttcttcttcttcctcttgatttcaa 32639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 36613166 - 36613533
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36613166 atggcttcttcttcttcctcttgatttcaatccctaaatccattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaacccatt 36613265  T
Q  101 ccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaagacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36613266 ccagattcaccaactcaagagcctaatttcattttcattctcaaatctccttttcaccatgaaaatttcttaaaccaccacaaactcacgttaaagacta 36613365  T
Q  201 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 300  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36613366 tctcttcctctctaaacaataattcattcatttcatacgcatgtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcacagg 36613465  T
Q  301 acgaacattgacactacttaaatgtccataagctttaaatgcaattaccatttggtctttgttgtcat 368  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36613466 acgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcat 36613533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 7675278 - 7674912
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    |||||||||||||| ||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  7675278 atggcttcttcttcctcctcttgatttcaattcctaaatccattcatttcagatctatt-ttttcacttcttcttcctttcgtaacttcaacaacccatt 7675180  T
Q  101 ccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaagacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  7675179 ccagattcaccaactcaagagcctaatttcattttcattctcaaatctccttttcaccatgaaaatttcttaaaccaccacaaactcgcgttaaagacta 7675080  T
Q  201 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7675079 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 7674980  T
Q  301 acgaacattgacactacttaaatgtccataagctttaaatgcaattaccatttggtctttgttgtcat 368  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7674979 acgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcat 7674912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 39222261 - 39222032
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctct-----aaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaa 95  Q
    |||||||||||||||||||||||||||||| | |      ||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||         
T  39222261 atggcttcttcttcttcctcttgatttcaaccccaccccaaaatccattcatttcatatctattcttttcacttcttcttcttttggtaacttca----- 39222167  T
Q  96 ccattccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaa 195  Q
       |||||||||||||||||||||| ||| ||||||||||| || ||||||||| ||||||||||||| ||| ||||||||||||||||||||||  ||     
T  39222166 ---ttccagattcaccaactcaagaccctgatttcattttcattcccaaatctcattttcaccatgaaaattccttaaaccaccacaaactcacggcaat 39222070  T
Q  196 gactatctcttcctctctaaacaagaattcattcattc 233  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39222069 gactatctcttcctctctaaacaagaattcattcattc 39222032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 8156557 - 8156190
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    |||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  8156557 atggcttcttcttcttcctcttgatttcaattccaaaatccattcatttcagatctattattttcacttcttcttcctttggtaacttcaacaacccatt 8156458  T
Q  101 ccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaagacta 200  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8156457 ccagattcaccaactcaagagcctaatttcattttcattcccaaatctccttttcaccatgaaaatttcttaaaccaccacaaactcacgttaaagacta 8156358  T
Q  201 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacaccctccgaagaaattgagagatgaaattgttgtcatagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8156357 tctcttcctctctaaacaagaattcattcattccatacgcaagtgcttcgcgatcatcacatcctccgaagaaattgagagatgaaattgctgtcatagg 8156258  T
Q  301 acgaacattgacactacttaaatgtccataagctttaaatgcaattaccatttggtctttgttgtcat 368  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8156257 acgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcat 8156190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 29981745 - 29981839
Alignment:
Q  274 attgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagctttaaatgcaattaccatttggtctttgttgtcat 368  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29981745 attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcat 29981839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 12129955 - 12130021
Alignment:
Q  87 ttcaacaaaccattccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttt 153  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  12129955 ttcaacaacctattccagattcaccaactcaagagcctaatttcattttcattatcaaatctccttt 12130021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28618858 - 28618625
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatct----ctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaac 96  Q
    ||||||||||||| ||| |||||||||||| |     | ||||| ||| |||||| ||||||||||||||||||||||| |||| |||||||||          
T  28618858 atggcttcttcttattcatcttgatttcaacccaccccaaaatccatttatttcatatctattcttttcacttcttctttctttggtaacttca------ 28618765  T
Q  97 cattccagattcaccaactcaagagcctaatttcattttcctttccaaatctccttttcaccatgaagatttcttaaaccaccacaaactcacgttaaag 196  Q
      |||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||||| ||| |||||| ||||||||||| ||   ||||    
T  28618764 --ttccagattcaccaactcaagaccctaatttcattttcattctcaaatctccttttcaccatgaaaattccttaaatcaccacaaacttacaacaaag 28618667  T
Q  197 actatctcttcctctctaaacaagaattcattcattccatac 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  28618666 actatctcttcctctataaacaagaattcattcattccatac 28618625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 7247451 - 7247397
Alignment:
Q  182 aaactcacgttaaagactatctcttcctctctaaacaagaattcattcattccat 236  Q
    |||||||||  | ||||||||||||||||||||||||||||||||| ||||||||    
T  7247451 aaactcacggcatagactatctcttcctctctaaacaagaattcatccattccat 7247397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 17776009 - 17776192
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    ||||||||||||||||||||  |||||||| |   ||||| |||||||||||||||||||||||||| | ||||||||   ||||||||||||| |||||    
T  17776009 atggcttcttcttcttcctcg-gatttcaaccctaaaatccattcatttcagatctattcttttcacattttcttcctccggtaacttcaacaacccatt 17776107  T
Q  101 ---------ccagattcaccaactcaagagcc-taatttcattttcctttccaaatctccttttcaccatgaagatttcttaaac 175  Q
             |||||||||||||||||| | || ||||||||||||| ||  |||||||||||||||||||||| |||| ||||||    
T  17776108 aactccattccagattcaccaactcaaaaaccctaatttcattttcattctcaaatctccttttcaccatgaaaattttttaaac 17776192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 19077310 - 19077493
Alignment:
Q  1 atggcttcttcttcttcctcttgatttcaatctctaaatcaattcatttcagatctattcttttcacttcttcttcctttcgtaacttcaacaaaccatt 100  Q
    ||||||||||||||||||||  |||||||| |   ||||| |||||||||||||||||||||||||| | ||||||||   ||||||||||||| |||||    
T  19077310 atggcttcttcttcttcctcg-gatttcaaccctaaaatccattcatttcagatctattcttttcacattttcttcctccggtaacttcaacaacccatt 19077408  T
Q  101 ---------ccagattcaccaactcaagagcc-taatttcattttcctttccaaatctccttttcaccatgaagatttcttaaac 175  Q
             |||||||||||||||||| | || ||||||||||||| ||  |||||||||||||||||||||| |||| ||||||    
T  19077409 aactccattccagattcaccaactcaaaaaccctaatttcattttcattctcaaatctccttttcaccatgaaaattttttaaac 19077493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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