View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_18 (Length: 378)
Name: NF19727_low_18
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 35116084 - 35116435
Alignment:
| Q |
12 |
aagaaacaaaacaaaagaatggcctcaaaatctaccattaaactcctgaccttcttctacttcatgctcttcggcttcatgaatttaaacagtactgtaa |
111 |
Q |
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| T |
35116084 |
aagaaacaaaacaaaagaatggcctcaaaatctaccattaaactcctgaccttcttctacttcatgctcttcggcttcatgaatttaagcagtactgtaa |
35116183 |
T |
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| Q |
112 |
tatcattgagtagtaatcatcatcatgcaagcatatgcaatggttccatagctgaatgcaatcaagaagatgaacaattgatggagtcagagataagcag |
211 |
Q |
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| T |
35116184 |
tatcattgagtagtaatcatcatcatgcaagcatatgcaatggttccatagctgaatgcaatcaagaagatgaacaattgatggagtcagagataagcag |
35116283 |
T |
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| Q |
212 |
aaggtttttggagcaaaggagatacatttctgaaggagctcttaagagagataaaccagtttgtaatggtggtgcaggtggtgaagcttatagtaaatct |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35116284 |
aaggtttttggagcaacggagatacatttctgaaggagctcttaagagagataaaccagtttgtaatggtggtgcaggtggtgaagcttatagtaaatct |
35116383 |
T |
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| Q |
312 |
gcagggtgtattcctccaccttcaaatccttataatagaggatgttctaagt |
363 |
Q |
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| T |
35116384 |
gcagggtgtattcctccaccttcaaatccttataatagaggatgttctaagt |
35116435 |
T |
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