View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_19 (Length: 372)
Name: NF19727_low_19
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_19 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 20980232 - 20979878
Alignment:
| Q |
1 |
accttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaaagcattgctaacacagccgactattttcgaca |
100 |
Q |
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| T |
20980232 |
accttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaacgcattgctaacacagccgactattttcgaca |
20980133 |
T |
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| Q |
101 |
ctgacctcgttgctgggttacaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaatccattggagga |
200 |
Q |
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| T |
20980132 |
ctgacctcgttgctgggttccaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaatccattggagga |
20980033 |
T |
|
| Q |
201 |
accaagaacccggttacagtcttcgttattaaattgatagtgactgagtaagaaatcttcggaaatggttataaactgattaggcaaggaatagtctttg |
300 |
Q |
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| T |
20980032 |
accaagaacccggttacagtcttcgttattaaattgatagtgactgagtacgaaatcttcggaaatggttataaactgattaggcaaggaatagtctttg |
20979933 |
T |
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| Q |
301 |
ttcttgcacgaaaacattgtga-----ggtgtttagggtttcgtggagatgattt |
350 |
Q |
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| T |
20979932 |
ttcttgcacgaaaacattgtgaggtgaggtgtttagggtttcgtggagatgattt |
20979878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 20967409 - 20967066
Alignment:
| Q |
1 |
accttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaaagcattgctaacacagccgactattttcgaca |
100 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
20967409 |
accttatattttccggttgtattatcgcaaccaaatgaaaatctgaaatagtcataccggtccataaaagtattggtaaaacagccgactatttttgaca |
20967310 |
T |
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| Q |
101 |
ctgacctcgttgctgggttacaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaatccattggagga |
200 |
Q |
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| T |
20967309 |
ctgacctcgtggctgggttccagaaacggagatggaagttttgaacatta------tggtatatatgttgactgagcatgcatatcaatccattggagga |
20967216 |
T |
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| Q |
201 |
accaagaacccggttacagtcttcgttattaaattgatagtgactgagtaagaaatcttcggaaatggttataaactgattaggcaaggaatagtctttg |
300 |
Q |
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||||||||| |||||||||||||||| || | |||||||||| |||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||| |
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| T |
20967215 |
accaagaactaggttacagtcttcgttcttcacttgatagtgattgagtacaaaatctttggaaatggttataaactgactaggaaaggaatagtctttg |
20967116 |
T |
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| Q |
301 |
ttcttgcacgaaaacattgtgaggtgtttagggtttcgtggagatgattt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20967115 |
ttcttgcacgaaaacattgtgaggtgtttagggttttgtggagatgattt |
20967066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 4901 - 4865
Alignment:
| Q |
169 |
tcactgagcatgcatatcaatccattggaggaaccaa |
205 |
Q |
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||||||||||||||||||||||||||| | ||||||| |
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| T |
4901 |
tcactgagcatgcatatcaatccattgcatgaaccaa |
4865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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