View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19727_low_2 (Length: 585)

Name: NF19727_low_2
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19727_low_2
NF19727_low_2
[»] chr5 (11 HSPs)
chr5 (16-585)||(37844571-37845140)
chr5 (26-322)||(37831851-37832147)
chr5 (20-342)||(37842947-37843269)
chr5 (25-326)||(37850678-37850979)
chr5 (22-332)||(37837332-37837642)
chr5 (388-511)||(35025487-35025610)
chr5 (354-537)||(37846181-37846364)
chr5 (403-522)||(37851838-37851957)
chr5 (386-520)||(37838511-37838645)
chr5 (210-326)||(28089826-28089942)
chr5 (410-537)||(37832971-37833098)
[»] chr1 (1 HSPs)
chr1 (25-101)||(8680131-8680207)
[»] chr8 (1 HSPs)
chr8 (49-182)||(29250525-29250658)
[»] chr7 (3 HSPs)
chr7 (388-522)||(36867190-36867324)
chr7 (22-80)||(36866265-36866323)
chr7 (286-326)||(36866040-36866080)
[»] scaffold0012 (1 HSPs)
scaffold0012 (37-121)||(52183-52264)
[»] chr6 (1 HSPs)
chr6 (37-113)||(31634106-31634179)


Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 37845140 - 37844571
Alignment:
Q  16 catataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845140 catataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatcc 37845041  T
Q  116 agtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845040 agtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaa 37844941  T
Q  216 ttcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844940 ttcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctct 37844841  T
Q  316 gtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844840 gtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatatt 37844741  T
Q  416 ggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttacttt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844740 ggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttacttt 37844641  T
Q  516 tggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttcccatcagtttaact 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844640 tggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttcccatcagtttaact 37844571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 37832147 - 37831851
Alignment:
Q  26 gtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgc 125  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |||    
T  37832147 gtggtgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagactaaaccatattcctctccaatccagtagtctgc 37832048  T
Q  126 gtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttc 225  Q
    || ||| ||||||||| |||||||||||||  |||||||||||||||| |||   |||| ||||||  || |||| |||||||  |||||||| | ||||    
T  37832047 gtgtttgatcaaatttcgatgcttaaacatcccaaggacttcaatttcgttgcgtatgatacttagccgctttttcttgttccacccaaattcgaccttc 37831948  T
Q  226 tttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcct 322  Q
    |||| ||||||| | || ||||||| |||  ||||||||||| ||| |||| ||||| ||||||| |||||    | |||||||||||| |||||||    
T  37831947 tttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatataacattgatttaggttctcagtagcct 37831851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 37843269 - 37842947
Alignment:
Q  20 taaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagta 119  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |||  ||||||||||||    
T  37843269 taaagagtggtggaggtttcttctcatgcaaaatatcatgaaggcttccatttttcatgaattcatacaagactaaaccatagtcctttccaatccagta 37843170  T
Q  120 gtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattca 219  Q
    ||  |||||||| ||||  ||| |||||||| ||||| |||| ||||||||||||||| |||| | || |||  || ||    |||| |||   ||||||    
T  37843169 gtcagcgtatttgatcacgtttcgatgcttatacattccaagcacttcaatttcattgcacatcatacgtagccgctttaccctgttgcttgtgaattca 37843070  T
Q  220 aacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtag 319  Q
    |||||||||| |||| || | ||||||||||| | | ||||||||||| ||| ||||||||| || ||||||||||| |||||| |||||||||||||||    
T  37843069 aacttctttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttctctgtag 37842970  T
Q  320 cctccaaaactaggtcctgaagg 342  Q
    ||| ||| ||||| | |||||||    
T  37842969 cctgcaacactagtttctgaagg 37842947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 25 - 326
Target Start/End: Complemental strand, 37850979 - 37850678
Alignment:
Q  25 ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg 124  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||   ||||||||||||||       
T  37850979 ggtggtggaggtttcttttcatgcaagatatcatgaaggcttccattttccatgaattcatataagattaaaccatagtcatttccaatccagtagtcca 37850880  T
Q  125 cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt 224  Q
       |||| || |||||| |||||||||||||  | |||||||||| ||| |||  | ||| ||||||  || |||  ||||||| ||  ||||||| |||    
T  37850879 aacatttgattaaatttcgatgcttaaacatccctaggacttcaacttcgttgcgcgtgatacttagccgcttttgcttgttccgtctgaattcaacctt 37850780  T
Q  225 ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcctcc 324  Q
    ||||| |||| || |   || || || |||| ||||||||||| ||| ||||||||| |  |||||||||||  |||||||||||||||| |||||||||    
T  37850779 ctttacagcacaaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttctcagtagcctcc 37850680  T
Q  325 aa 326  Q
    ||    
T  37850679 aa 37850678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 37837642 - 37837332
Alignment:
Q  22 aagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt 121  Q
    |||||||||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||||||||| || ||||||||| ||   ||||||||||| |     
T  37837642 aagggtggtgggggtttcatttcatgcaaaatttcataaaggcttccattttcaatgaatttatatatgattaaaccatagtcatttccaatccagtggc 37837543  T
Q  122 gtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaa 221  Q
          |||| ||||||||||||||| |||       ||||||||||||||| |||  ||||| |||| |   | |||   |||||  ||||||||||||    
T  37837542 tccaacatttgatcaaattttgatgcctaaggcccctaaggacttcaatttcgttgtccatgatacttcgccacttttgcctgttcaatccaaattcaaa 37837443  T
Q  222 cttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcc 321  Q
    |||||||| |||| |||| || | |  || |||  ||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  37837442 cttctttacagcacaagcctgctcattaattatggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttaggttctctgtagcc 37837343  T
Q  322 tccaaaactag 332  Q
    |||||||||||    
T  37837342 tccaaaactag 37837332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 388 - 511
Target Start/End: Complemental strand, 35025610 - 35025487
Alignment:
Q  388 tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa 487  Q
    ||||||||||  || |||| | ||||||| ||||||||||  || |||||||| |||||||||||||||| || |||||||  |  |||||||||||| |    
T  35025610 tacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaaga 35025511  T
Q  488 tcaaacaaggccaaacataggtta 511  Q
    |||||| ||||||| |||||||||    
T  35025510 tcaaactaggccaagcataggtta 35025487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 537
Target Start/End: Complemental strand, 37846364 - 37846181
Alignment:
Q  354 attggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttg 453  Q
    |||||||| ||  ||||||||||| |||||||||||||||||||  |   ||| ||||||||| |||||  ||||||| ||||||||||||||| |||      
T  37846364 attggcatgtataaagtatgatttaggttgataatacaaggatttcttttggtacatatattgaccccactgtgagaggaaaaaccaattgaaaagttgt 37846265  T
Q  454 gtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctacc 537  Q
    |||| |  ||| |||  |  |||||||||| ||||||||||||||     |||||||| |||||||||| | ||||||||||||    
T  37846264 gtaagtgttggcccagtgatagagggaaggtaaatcaaacaaggctgggaataggttatttttggaacaattagagcagctacc 37846181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 522
Target Start/End: Complemental strand, 37851957 - 37851838
Alignment:
Q  403 aggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaa 502  Q
    |||||| ||||||| |||||| |||| || |||||||| |||||||||||||||| || |||||||  |  ||||||| |||| ||||||| || ||||     
T  37851957 aggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaag 37851858  T
Q  503 cataggttacttttggaaca 522  Q
    ||||||||| ||||||||||    
T  37851857 cataggttatttttggaaca 37851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 520
Target Start/End: Complemental strand, 37838645 - 37838511
Alignment:
Q  386 aatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaa 485  Q
    ||||||||||||  || |||||  ||||||| ||||||||||| || ||||||||||||||||||||||||| || ||||||   |  ||||||| ||||    
T  37838645 aatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaa 37838546  T
Q  486 aatcaaacaaggccaaacataggttacttttggaa 520  Q
     ||||||   |||||| ||||||||| ||||||||    
T  37838545 gatcaaaattggccaagcataggttatttttggaa 37838511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 28089942 - 28089826
Alignment:
Q  210 tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg 309  Q
    |||||||||||  ||||||| |||| || | ||||||||||  ||  ||||||||||| ||| ||||||||| ||||||| ||||||   ||||||||||    
T  28089942 tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg 28089843  T
Q  310 ttctctgtagcctccaa 326  Q
    ||||||||||| |||||    
T  28089842 ttctctgtagcttccaa 28089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 537
Target Start/End: Complemental strand, 37833098 - 37832971
Alignment:
Q  410 tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggt 509  Q
    ||||||| |||||||| || || |||||||| |||||||||||||||| || |||||||  |  |||||||| |||  |||||  | ||||| |||| ||    
T  37833098 tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccattgatagagggaatgaaggtcaaatgacgccaagcataagt 37832999  T
Q  510 tacttttggaacattcagagcagctacc 537  Q
    || |||||||| | | ||||||||||||    
T  37832998 tatttttggaagaattagagcagctacc 37832971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 8680131 - 8680207
Alignment:
Q  25 ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccata 101  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  8680131 ggtggcgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagagtaaaccata 8680207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 29250525 - 29250658
Alignment:
Q  49 aaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgct 148  Q
    |||||||||||||||||||||||||| ||||||| | | |||||||||||||| |||  ||||||||| |||| ||| ||||| ||||  |||   ||||    
T  29250525 aaaatatcatgaaggcttccattttctatgaattcaaacaagactaaaccatattcctatccaatccattagtatgcttatttgatcatgtttaattgct 29250624  T
Q  149 taaacattgcaaggacttcaatttcattgaacat 182  Q
    || ||||| ||||  |||||||||| ||| ||||    
T  29250625 tacacattccaagtgcttcaatttctttgcacat 29250658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 522
Target Start/End: Complemental strand, 36867324 - 36867190
Alignment:
Q  388 tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa 487  Q
    ||||||||||  || |||| | ||||||| ||||||||||| || |||||||| |||||||||||| ||| || |  || |  |  |||||||||||| |    
T  36867324 tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaaga 36867225  T
Q  488 tcaaacaaggccaaacataggttacttttggaaca 522  Q
    |||||| ||||||||||||| ||| ||||||||||    
T  36867224 tcaaactaggccaaacatagtttatttttggaaca 36867190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 36866323 - 36866265
Alignment:
Q  22 aagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaa 80  Q
    |||||||||||||||||||| |||||||||||||  | |||||||||||| || |||||    
T  36866323 aagggtggtgggggtttcttttcatgcaaaatattgtaaaggcttccattgtcaatgaa 36866265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 36866080 - 36866040
Alignment:
Q  286 ccaataatatagtgatcatttaggttctctgtagcctccaa 326  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  36866080 ccaataatatattgatcatttaggttctctgtagcttccaa 36866040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 52264 - 52183
Alignment:
Q  37 ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt 121  Q
    ||||| ||||| |||||||||||||||||||   |||||||||||| ||| |||||||||||| | | | |||||||||||||||    
T  52264 ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaataaaagactaaaccacagttctctccaatccagtagt 52183  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 31634106 - 31634179
Alignment:
Q  37 ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaat 113  Q
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T  31634106 ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaatacaagactaaaccacaatcctctccaat 31634179  T

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