View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_22 (Length: 337)
Name: NF19727_low_22
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14174530 - 14174826
Alignment:
| Q |
1 |
ttcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacccaatattgtgataaca |
100 |
Q |
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| T |
14174530 |
ttcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacctaatattgtgataaca |
14174629 |
T |
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| Q |
101 |
ctcttctcatcagtcccccatcctacacaattcaaaatcatggattataaccaagattcacatacacgatttggaccgcagcatcaatattttttgtgtc |
200 |
Q |
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| T |
14174630 |
ctcttctcatcagtcccccatcctacacaattcaaaatcatggattataaccaagattcacatacacgatttggaccgcagcatcaatattttttgtgtc |
14174729 |
T |
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| Q |
201 |
agggccac-aatgttaccatgtgttcgtagcaatatcaaagaacacaacgcaaccacaattgttcttcgcaatatttttatgagtaaattaaagaaa |
296 |
Q |
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| T |
14174730 |
atggccacaaatgttaccatgtgttcgtagcaatatcaaagaacgcaatgcaaccacaattgttcttcgcaatatttttacgagtaaattaaagaaa |
14174826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 14153088 - 14153173
Alignment:
| Q |
1 |
ttcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgaccca |
86 |
Q |
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| T |
14153088 |
ttcaaggcgtttgatgagatcctcttgataaatgtcctgataagcttgtctaatttgttgcctttgaacagcatttctctgaccca |
14153173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 14174829 - 14174862
Alignment:
| Q |
285 |
aaattaaagaaattatacaacctttgaaagctcc |
318 |
Q |
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| T |
14174829 |
aaattaaagaaattatacaacctttgaaagctcc |
14174862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 14167689 - 14167776
Alignment:
| Q |
40 |
ataagattttctgatttgttgtctctgataaacatttctatgacccaatattgtgataacactcttctcatcagtcccccatcctaca |
127 |
Q |
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| T |
14167689 |
ataagcttttctgatttgctgtatctgattagagtttctatgaccaagtattgttatcactgtcttctcatcagtaccccatcctaca |
14167776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 5180151 - 5180061
Alignment:
| Q |
2 |
tcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacccaatattg |
92 |
Q |
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||||| ||||||| || |||||||| | ||| |||| ||||| |||||| || ||||| ||||||| |||||||||||||||||| |||| |
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| T |
5180151 |
tcaagacgtttgatgagatcctcttcgaaaagctcctcataagcttttctaatctgttgcctctgatgaacatttctatgacccaaaattg |
5180061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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