View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_25 (Length: 323)
Name: NF19727_low_25
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 33715919 - 33716021
Alignment:
| Q |
203 |
aatttaaaaacaccacaactatattaaagtcgtgttacgaatatctagtactaatagacaagctctaagatcaaaacacgggattgcatctagcaatagc |
302 |
Q |
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| T |
33715919 |
aatttaaaaacaccacaactatatcaaagtcgtgttacgaatatctagta---atagacaagctctaagatcaaaacacgggattgcatctagcaatagc |
33716015 |
T |
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| Q |
303 |
tgcgtt |
308 |
Q |
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|||||| |
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| T |
33716016 |
tgcgtt |
33716021 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 33715586 - 33715660
Alignment:
| Q |
11 |
cacagatactgtttaccttatcatcatgtaactttgcattttccatcgaactagagaaatatacatctttgtaag |
85 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715586 |
cacaaatactgtttaccttatcatcatgtaactttgcattttccatcgaactagagaaatatacatctttgtaag |
33715660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 33715722 - 33715778
Alignment:
| Q |
147 |
catttgtttggtttcaaaataccattcagtgtttacgtgtttccgttgttttttcta |
203 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33715722 |
catttgtttggtttcaaaataccattcagtttttacgtgtttccgttgttttttcta |
33715778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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