View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_26 (Length: 320)
Name: NF19727_low_26
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 48569829 - 48569526
Alignment:
| Q |
1 |
tatatattttacatcagtataatagccgcactgcacatggcaacttattacaagataactatgggagagnnnnnnnctgatgacgtgcagaagatagcct |
100 |
Q |
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| T |
48569829 |
tatatattttacaacagtataatagccgcactgcacatggcaacttattacgagataactatgggagagaaaaaaactgatgacgtgcagaagatagcct |
48569730 |
T |
|
| Q |
101 |
tccaacatccactaaatcatatacaagcctccagaatttgcgtttaatnnnnnnncatattgttgagctcataaacctgcattcatgttcttgatgtaat |
200 |
Q |
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| T |
48569729 |
tccaacatccactaaatcatatacaagcctccagaatttgcgtttaataaaaaa-cattttgttgagctcataaacctgcattcatgttcttgatgtaat |
48569631 |
T |
|
| Q |
201 |
taaataaactcatttgaaatacatttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaat |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569630 |
taaataaactcatttgaaatacatttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaat |
48569531 |
T |
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| Q |
301 |
tcatc |
305 |
Q |
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||||| |
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| T |
48569530 |
tcatc |
48569526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 36145966 - 36145900
Alignment:
| Q |
239 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
305 |
Q |
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| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattcatc |
36145900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 10821422 - 10821488
Alignment:
| Q |
239 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
305 |
Q |
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|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||| |
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| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattcatc |
10821488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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