View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_28 (Length: 304)
Name: NF19727_low_28
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 34700912 - 34700698
Alignment:
| Q |
14 |
aggtttgagctcaaccgcctggtgtgcgattcttaaacctcaagttcacatcaccttgtttaccggacattgttttctatgcatcttatatataagccct |
113 |
Q |
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| T |
34700912 |
aggtttgagctcaaccgcctggtgtgcgattcttaaacctcaagttcacatcacctcgtttaccggacattgttttctatgcatctta--tataagccct |
34700815 |
T |
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| Q |
114 |
cgtagttttgtcatttatgaaagacgtttgagtgtatattattttgaaaacattcttaatattttgtttgaaaccgttattttaaatatcacctatgtga |
213 |
Q |
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| T |
34700814 |
cgtagttttgtcatttgtgaaagacgtttgagtgtatattattttgaaaacattcttaacattttgtttgaaa-cgttattttaaataccacctatgtga |
34700716 |
T |
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| Q |
214 |
attctattctttagacga |
231 |
Q |
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|||||||||||||||||| |
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| T |
34700715 |
attctattctttagacga |
34700698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 34700553 - 34700494
Alignment:
| Q |
229 |
cgacaaaggcctacattttaacctatttaaagcctaactcggcttaacccgtttaataaa |
288 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34700553 |
cgacaaagatctacattttaacctatttaaagcctaactcggcttagcccgtttaataaa |
34700494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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