View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_30 (Length: 296)
Name: NF19727_low_30
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 49 - 280
Target Start/End: Original strand, 1046045 - 1046283
Alignment:
| Q |
49 |
ttatgattatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactattataagaaaacaacnnnnnnnnnnnng |
148 |
Q |
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| T |
1046045 |
ttatgaatatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactcttataagaaaacaactatatatatatat |
1046144 |
T |
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| Q |
149 |
ct-------ttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgcttcttataaataaataaat |
241 |
Q |
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| T |
1046145 |
atatatagcttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtatatatatgcttcttataaataaataaat |
1046244 |
T |
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| Q |
242 |
gtaacccttcttattcttgttgccatattatataaatat |
280 |
Q |
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| T |
1046245 |
gtaacccttcttattcttgttaccatattatataaatat |
1046283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 1045917 - 1045736
Alignment:
| Q |
35 |
tttaaaactttaaattatgattatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactattataagaaaacaa |
134 |
Q |
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| T |
1045917 |
tttaaaactttaaattatgaatatttttaatttgctataaactttgataatgagagaacaacgaaagagtttatgatcaaagactcttattagaaaacaa |
1045818 |
T |
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| Q |
135 |
cnnnnnnnnnnnngctttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgct |
223 |
Q |
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| T |
1045817 |
c------tatatagc-ttcaattaaagaattatttttgttcagattttacttgattttatgaacatgtcaatgtttgtaaatatatgct |
1045736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 1041756 - 1041834
Alignment:
| Q |
151 |
ttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgcttcttat |
229 |
Q |
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| T |
1041756 |
ttcaatgtaagaattagttgtgttcaaattttacttgatttcatgaacatgtcaaggtttgtatatatatgcttcttat |
1041834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 1041661 - 1041742
Alignment:
| Q |
56 |
tatttaaaatttgctagaaactttga--tgatga-gagaacaacgaat--gagtttatgttcaaagactattataagaaaacaa |
134 |
Q |
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| T |
1041661 |
tatttgaaatttgctagaaactttgatttgatgatgagaacaacgaatgagagtttatattcaaagac--ttataagaaaacaa |
1041742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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