View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_36 (Length: 252)
Name: NF19727_low_36
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 35613312 - 35613092
Alignment:
| Q |
15 |
gagcacagagtactagcaaactcacacaaagagagagtttccttagctttcttctacaatccaaaaagtgacattccaatagagccagctaaggaattgg |
114 |
Q |
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| T |
35613312 |
gagcatagagtaatagcaaactcacacaaagagagagtttccttagccttcttctacaatcccaaaagtgacattccaatagagccagcaaaagaattgg |
35613213 |
T |
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| Q |
115 |
taaagccagataaacctgccctctatcctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagtagaatc |
214 |
Q |
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| T |
35613212 |
taaagccagataaacctgccctctaccctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagttgaatc |
35613113 |
T |
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| Q |
215 |
tttaaaatctccaagatgata |
235 |
Q |
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||||||||||||||||||||| |
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| T |
35613112 |
tttaaaatctccaagatgata |
35613092 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 31789833 - 31789746
Alignment:
| Q |
128 |
acctgccctctatcctgctatgacctttgatgaatataggcttttcattagaatgaggggtccatgtggaaaatctcaagtagaatct |
215 |
Q |
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| T |
31789833 |
acctgcactctacccagcaatgacctttgatgagtacagactcttcattagaatgaggggaccttgtggcaaatctcaagttgaatct |
31789746 |
T |
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