View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19727_low_38 (Length: 251)
Name: NF19727_low_38
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 22352628 - 22352810
Alignment:
| Q |
1 |
aatattgtacttgatgtagttgtgcattgtggggtgtccgattttgatcggacggctcacatttcaactgcataattaaagataaattgtgttattgaaa |
100 |
Q |
| |
|
||||||||| ||||| | ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22352628 |
aatattgtatttgatacaattgtgcattttggggtgtacggttttgatcggacggctcacatttcaactgcataattaaagataaattgtgttattgaaa |
22352727 |
T |
|
| Q |
101 |
tttagttgtctgattgatcaaacattccacgattgcacgactgcgttagattttctcactacatagaatcttcatctattaagt |
184 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22352728 |
tttagttgtcagattgatcaaacattccacga-tacacgactgcgttagattttctcactacatagaatcttcatctattaagt |
22352810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 22347376 - 22347563
Alignment:
| Q |
25 |
cattgtggggtgtccgattttgatcggacggctcacatttcaactgcataattaaagataaattgtgttattgaa-atttagttgtctgattgatcaaac |
123 |
Q |
| |
|
|||||||| |||| | ||||| || |||| ||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| || ||||| |||| |
|
|
| T |
22347376 |
cattgtggagtgttcaattttaattggaccactcacatatcaactgcataattatggataaattgtgtgattgaatttttagttgtttggttgattaaac |
22347475 |
T |
|
| Q |
124 |
attccacgattgcacgactgcgttagattttctcactacatagaatcttcatctattaagttagttttcaattgatagtatgcttggtt |
212 |
Q |
| |
|
||| ||| | |||||||||| ||| ||| || |||| |||||||| | ||| || ||||||||| |||||||||||| |||||| |
|
|
| T |
22347476 |
atttcac-aatgcacgactgttttaattttcctaactagatagaatcctgatcccctattttagttttcgattgatagtatgtttggtt |
22347563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 22352808 - 22352852
Alignment:
| Q |
200 |
agtatgcttggtttatatatttt-ttcaatgcaaagagaataatc |
243 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
22352808 |
agtatgtttggtttatatttttttttcaatgcaaagagaataatc |
22352852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University