View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_39 (Length: 251)
Name: NF19727_low_39
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_39 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 4296675 - 4296909
Alignment:
| Q |
16 |
atatacacttacttttagctaacactagtaagattggttgttgcccatcatattttacgggggtgaaacaactttatatacggccaaatgacggcactcc |
115 |
Q |
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| T |
4296675 |
atatacacttacttttagctaacactagtaagattggttgttgcccatcatattttacggtggtgaaacaactttatatacggccaaatgacggcactcc |
4296774 |
T |
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| Q |
116 |
tttttgtaattcgacagtttatcgtcgccccgttggtcgtctcttatatctactaaactataatatcattctcttgaaaaatggcttgttacacaagaca |
215 |
Q |
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| T |
4296775 |
tttttgtaattcgacagtttatcgtcgccccattggtcgtctcttatatctactaaactataatatcattctttcgaaaaatggcttgttacacaagaca |
4296874 |
T |
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| Q |
216 |
ctaaggacacatcggacacagtgaggcatggttttc |
251 |
Q |
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| T |
4296875 |
ctaagg-cacatcggacacagtgaggcatggttttc |
4296909 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 2000388 - 2000461
Alignment:
| Q |
94 |
tacggccaaatgacggcactcctttttgtaattcgacagtttatcgtcgccccgttggtcgtctcttatatcta |
167 |
Q |
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| T |
2000388 |
tacgtccaaatgacggaacccctctttctgatccgacagtttatcgtcgccacgtaggtcgtctcctatatcta |
2000461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 984635 - 984562
Alignment:
| Q |
94 |
tacggccaaatgacggcactcctttttgtaattcgacagtttatcgtcgccccgttggtcgtctcttatatcta |
167 |
Q |
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| T |
984635 |
tacgtccaaatgacggaacccctctttctgatccgacagtttatcgtcgcctcgtaggtcgtctcctatatcta |
984562 |
T |
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