View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_4 (Length: 574)
Name: NF19727_low_4
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 244 - 561
Target Start/End: Original strand, 5892341 - 5892664
Alignment:
| Q |
244 |
tcaaaacattcctaccattaaaatcgtagttcattaaacctctttttactcgtaaaataagtattttgaataaaattcaagtattatttctgcctgatgc |
343 |
Q |
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| T |
5892341 |
tcaaaacattcctaccattaaaatcgtagttcattaaacctctttttacacgtaaaataagtattttgaataaaattcaagtattatttctgcctgatcc |
5892440 |
T |
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| Q |
344 |
tcaaatcaaaagtcaaagaaagtaatagtagtatcaacaacttctagatttttagtatgggaataa-------tcggtaccacgatatatataattttca |
436 |
Q |
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| T |
5892441 |
tcaaatcaaaa-tcaaagaaagtaatagtagtatcaacaacttctagatttttagtatgggaataatcgctagtcgctaccacgatatatataattttca |
5892539 |
T |
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| Q |
437 |
taaattttgagtccttatatatacacattcattcatgttcttatttgtctcaaaattcatcaccaacaaatacttcaactctaaacattgaacaaaactt |
536 |
Q |
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| T |
5892540 |
taaactttgagaccctatatagacacatgcattcatggtcttatttgtctcaaaattcatcaccaacaaatacttcaactctaaacatggaacaaaactt |
5892639 |
T |
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| Q |
537 |
tcttctctacatcattttccctttc |
561 |
Q |
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| T |
5892640 |
ccttctctacatcattttctctttc |
5892664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 5892077 - 5892302
Alignment:
| Q |
15 |
atatatttcacaaagtttgattttaaaattacaaagtttctttaccgctaagtcttgaacagttggttgatatgcacatgtatgagtatgagtcttgtaa |
114 |
Q |
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| T |
5892077 |
atatatttcacaaagtttgattttaaaattacaaagtttttttaccgctaagtcttgaacagttggctgatatgcacatgtat------gagtcttgtaa |
5892170 |
T |
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| Q |
115 |
atcatgagaattatctatttatttttcggttgaggaaatgaaattcgacttttattcataaatatcaggatcaaaagaaatttccattatgtgtcgggt- |
213 |
Q |
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| T |
5892171 |
atcatgagaattatctatttatttttcggttgaggaaatgaaattcgacttttattcataaatattaggatcaaaagaaatttccattatgtgtcgggtc |
5892270 |
T |
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| Q |
214 |
caaacttttgtttgatatagatgtgtcgggtc |
245 |
Q |
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| T |
5892271 |
caaatttttgtttgatatagatgtgtcgggtc |
5892302 |
T |
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