View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_42 (Length: 243)
Name: NF19727_low_42
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 2762058 - 2761843
Alignment:
| Q |
13 |
taggtgcatcaattggaacaccaagtttagagtccttgttggggtggttgtagctattatttttccaaggattaaagaaaagctcgcaccaatcttaaac |
112 |
Q |
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| T |
2762058 |
taggtgcatcaattggaacaccaagtttagagtccttgttggagtggttgtagctattatttttccaaggattaaagaaaagctcgcaccaatcttaaac |
2761959 |
T |
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| Q |
113 |
accacaaatgactactaaagtaagaaagaaatgtaaaaatgacctcagaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2761958 |
accacaaatgactactaaagtaagaaagaaatgtaaaaatgacctcagaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttca |
2761859 |
T |
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| Q |
213 |
caaccaaattataaaa |
228 |
Q |
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|||||||||||||||| |
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| T |
2761858 |
caaccaaattataaaa |
2761843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 2800549 - 2800412
Alignment:
| Q |
88 |
agaaaagctcgcaccaatcttaaacaccacaaatgactactaaagtaagaaagaaatgtaaaaatgacctcagaatggagtctaaataaaggtattgatt |
187 |
Q |
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|||||||||| ||||||||| |||||||| ||||| | | | || ||||||||||| |||||| || |||||||||| ||||| |||| |||||| |
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| T |
2800549 |
agaaaagctcccaccaatctgaaacaccaaaaatggcaaat---gttggaaagaaatgtccaaatgatgtctgaatggagtccaaatataggtcttgatt |
2800453 |
T |
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| Q |
188 |
acaaggttttcaatcaaacctttcacaaccaaattataaaa |
228 |
Q |
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| T |
2800452 |
acaaggttttgaatcaaagcttccaaaactaaattataaaa |
2800412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 2810062 - 2809982
Alignment:
| Q |
148 |
aaaatgacctcagaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttcacaaccaaattataaaa |
228 |
Q |
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| T |
2810062 |
aaaatgacgtccgaatggagtctagatatacgtcttgattacaagattttgaatcaaaacttccacaatcaaattataaaa |
2809982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 2835084 - 2835152
Alignment:
| Q |
160 |
gaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttcacaaccaaattataaaa |
228 |
Q |
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| T |
2835084 |
gaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttccagaaccaaattataaaa |
2835152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2822247 - 2822215
Alignment:
| Q |
13 |
taggtgcatcaattggaacaccaagtttagagt |
45 |
Q |
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| T |
2822247 |
taggtgcatcaattggaacaccgagtttagagt |
2822215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 11114758 - 11114850
Alignment:
| Q |
136 |
gaaagaaatgtaaaaatgacctcagaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttcacaaccaaattataaaa |
228 |
Q |
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||||||||||| |||||||| | ||||||| || | | | |||| |||||||||||||||| |||| || || |||||||||||||||||| |
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| T |
11114758 |
gaaagaaatgtcaaaatgacatgtgaatggaatccagaaataggtcttgattacaaggttttgaatcgaagtttccacaaccaaattataaaa |
11114850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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