View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_5 (Length: 549)
Name: NF19727_low_5
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 538
Target Start/End: Complemental strand, 47573684 - 47573165
Alignment:
| Q |
17 |
aatttagcctataa--tataagatacctagttttgaaaatttaactnnnnnnntgaaaagttatacgaacaccgtgttttagtatttttgatgtgttaaa |
114 |
Q |
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| T |
47573684 |
aatttagcctataaaatataagatacctagttttgaaaatttaactaaaaaaatgaaaagttatactaacaccgtgtcttagtatttttgatgtgctaaa |
47573585 |
T |
|
| Q |
115 |
gtcctccctaacaatgaccatttcccnnnnnnnnnnnnnnnnnntaaagaggtaatagagttttaatctaacgattaagtggtcatgagttcgatttnnn |
214 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||||||||||||| | | || |
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| T |
47573584 |
gtcctccctaacaatgaccatttcccaaaaaaataaaaaaaa--taaagagggaatagagttt-aatcttccgatcaagtggtcatgagtccaacttaaa |
47573488 |
T |
|
| Q |
215 |
nnnnnncaattgatgatgaaagttcaccatcgataaacaaaaaataaccaaaagggtcagtaatacaatataacataacaaccctaaaggatacaccaac |
314 |
Q |
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| T |
47573487 |
aaaaa-cgattgatgatgaaagttcaccatcaataaacaaaaaataaccaaaagggtagctaatacaatataacataacaactctaaaggatacaccacc |
47573389 |
T |
|
| Q |
315 |
cataaatctcaatctggagtacaaatctacatacgagcgcacaatctagtgagcttgcataggagctcattaccaattacaaaataaaaaggtacgtgaa |
414 |
Q |
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|| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47573388 |
cacaaatctcaatccggagtacaaatctacataccagcgcacaatctattgagcttgcgtaggagctcattaccaattacaaaataaaaaggtacgtgaa |
47573289 |
T |
|
| Q |
415 |
ctattatgaacaccgaatttgaatctttaggaagacgaggatccaaccgccgaaaaggatactaattgaaccccgcacctacaacccaccacacaccatc |
514 |
Q |
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|||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
47573288 |
ctatcatgaacaccgaatttggatttttaggaagacaaggatccaaccgccgaaaaggatactaattgaacctcgcacctacaacccaccacacatcatc |
47573189 |
T |
|
| Q |
515 |
gaaacatttaacatccacgttcat |
538 |
Q |
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|||||| ||| |||||| |||||| |
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| T |
47573188 |
gaaacaattagcatccatgttcat |
47573165 |
T |
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