View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19727_low_52 (Length: 210)
Name: NF19727_low_52
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 26862691 - 26862767
Alignment:
| Q |
17 |
atcaatagcatattcacaattgaattttgataatgaaacatacaaaaaagaatagtatgctagagtaacaaagattag |
94 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26862691 |
atcaatagcacattcacaattgaattttgataatgaaacatac-aaaaagaatagtatgctagagtaacaaagattag |
26862767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 26862765 - 26862798
Alignment:
| Q |
160 |
taggccaacaccacgtaccatgaggcatgtatac |
193 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
26862765 |
taggccaacaccacgtatcatgaggcatgtatac |
26862798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University