View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_7 (Length: 523)
Name: NF19727_low_7
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 220 - 486
Target Start/End: Complemental strand, 25559460 - 25559194
Alignment:
| Q |
220 |
tgtctttaaacgaattttgtgagaaatcaaacgtctaatacgagagataaattattttatatttattgtacaaatttatgaggaatcaattttattttac |
319 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25559460 |
tgtctttaaatgaattttgtgagaaatcaaacgtctaatacgagagataaattattttatatttattgtacaaatttatgaggaatcaattttattttac |
25559361 |
T |
|
| Q |
320 |
tctttaatcaaatgtccaaccatatgtgttcctttaaattttaaaaacccacaaagtactttaaaattttaaaattattgttatgaatctattgaaatcc |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
25559360 |
tctttaatcaaatgtccaaccatatgcgttcctttaaattttaaaaacccgcaaaatacttaaaaaatttaaaattactgttatgaatctattgaaatcc |
25559261 |
T |
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| Q |
420 |
atgagtaattttttattttacaattccaatgttattcgatgtactcttttaattgtttaattttcta |
486 |
Q |
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| T |
25559260 |
atgagtaattttttattttacaattccaatgttattcgatgtactcttttaattgtttaattttcta |
25559194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 25559707 - 25559509
Alignment:
| Q |
17 |
cagtgggggccaattattgtgaatttgattactacaaatctcacatcaatactagcttcaactctttaaaatgttaatggacaac----gcgaacatcta |
112 |
Q |
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| T |
25559707 |
cagtgggcgccaattattgtgaatttgataactacaaatctcacatcaatactagcttcaactctttaaaatgttagcggacaacagacgcgaatattta |
25559608 |
T |
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| Q |
113 |
caaactaaaatgattatagaatgatgtatttgacaaaatcagaatcttacgtcttcattcttcaacaatgatgtgtatatacttttgaattttctttct |
211 |
Q |
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| T |
25559607 |
caaactaaaatgattatagaatgatgtatttgacaaaatcagaatcttacgtcttcattcttcaacaatgatgtggatatacttttgaattttctttct |
25559509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 255 - 487
Target Start/End: Original strand, 2776560 - 2776787
Alignment:
| Q |
255 |
taatacgagagataaattattttatatttattgtacaaatttatgaggaatcaattttattttactctttaatcaaatgtccaaccatatgtgttccttt |
354 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2776560 |
taatacgagagataaattatttcatatttattgtacaaatttacgaggaatcaattttatgttactctttaatcaaatgtccaaccatatgtgttccttt |
2776659 |
T |
|
| Q |
355 |
aaattttaaaaacccacaaagtactttaaaattttaaaattattgttatgaatctattgaaatccatgagtaattttttattttacaattccaatgttat |
454 |
Q |
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| T |
2776660 |
aaattttaaaaacccgcaaagtattttaaaattttaaaaata-----ctgaatctattgaaatccatgagtaattttttattttacaattccaatgttat |
2776754 |
T |
|
| Q |
455 |
tcgatgtactcttttaattgtttaattttctag |
487 |
Q |
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| T |
2776755 |
tcgatgtactcttttaattgtttaattttctag |
2776787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 2776422 - 2776560
Alignment:
| Q |
17 |
cagtgggggccaattattgtgaatttgattactacaaatctcacatcaatactagcttcaactctttaaaatgttaatgga----caacgcgaacatcta |
112 |
Q |
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||||||| ||||||||||||||||||| | || |||||||||||||| ||| |||||||||||||||||||||| ||| |||| ||| || || |
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| T |
2776422 |
cagtgggcgccaattattgtgaatttggtagcttcaaatctcacatcactacccacttcaactctttaaaatgttaacggataacgaacgtgaaaattta |
2776521 |
T |
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| Q |
113 |
caaactaaaatgattatagaatgatgtatttgacaaaat |
151 |
Q |
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| T |
2776522 |
caaactaaaataattatagaatgatgtatttgacaaaat |
2776560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 520361 - 520332
Alignment:
| Q |
15 |
cacagtgggggccaattattgtgaatttga |
44 |
Q |
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| T |
520361 |
cacagtgggggccaattattgtgaatttga |
520332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 43278259 - 43278319
Alignment:
| Q |
355 |
aaattttaaaaacccacaaagtactttaaaattttaaaattat-tgttatgaatctattga |
414 |
Q |
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|||||||| |||||||||||||||||| |||| |||||| ||| |||||| |||| ||||| |
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| T |
43278259 |
aaattttataaacccacaaagtactttgaaatcttaaaaatatatgttataaatccattga |
43278319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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