View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19727_low_8 (Length: 502)
Name: NF19727_low_8
Description: NF19727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19727_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 42525013 - 42525478
Alignment:
| Q |
14 |
cccgtcacaataacctttcctgtgctatgctcagtctctactgtttgtactcctacattatcacattcacattttcacatcatatgcaagactagcattc |
113 |
Q |
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| T |
42525013 |
cccgtcacaataacctttcctgtgctatgctcagtctctactgtttgtactcctacattatcacattca--------catcatatgcaagactaacattc |
42525104 |
T |
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| Q |
114 |
atgtataaagcatgctttgttaattagcatgtttatggaaacagtattggaaaatggttaggtgaaattgtatgagtagtttttaaattatatgtagcct |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42525105 |
atgtataaagcatgcttggttaattagcatgtttatggaaacagtattggaaaatggttaggtgaaattgtatgaatagtttttaaattatatgtagcct |
42525204 |
T |
|
| Q |
214 |
ttttagttgtatttgttattaaattattgtccgcaactgcaatgcaattgcggcctcaatataaataattttgaggtctctacaacggcatcactactgc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525205 |
ttttagttgtatttgttattaaattattgtccgcaactgcaatgcaattgcggcctcaatataaataattttgaggtctctacaacggcatcactactgc |
42525304 |
T |
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| Q |
314 |
aattttgagatcagaatcacaaaactataatggaaccacataacttgatcattaagaaatcannnnnnnncttccaattttagcacatttggtgaaaatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42525305 |
aattttgagatcagaatcacaaaactataatggaaccacataacttgatcattaagaaatca-tttttttcttccaattttagcacatttggtgaaaatt |
42525403 |
T |
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| Q |
414 |
aattctacggagatagattaattgagctaaatatggagataattaagttgtacctttcattttgagtatcttccc |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525404 |
aattctacggagatagattaattgagctaaatatggagataattaagttgtacctttcattttgagtatcttccc |
42525478 |
T |
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