View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19728_high_1 (Length: 473)
Name: NF19728_high_1
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19728_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 1538071 - 1537850
Alignment:
| Q |
15 |
aatttaatgaattgtgtgggtatgtctagtcatctggcaggagatgcatcagttcattccaaaccaatttcaaaagccagaaactcttttaacctaacta |
114 |
Q |
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| T |
1538071 |
aatttaatgaattgtgtgggtatgtctagtcatctggcaggagatgcatcagtacattccaaaccaatttcaaaagccagaaactcttttaacctaacta |
1537972 |
T |
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| Q |
115 |
agttgcttacaaatatttaggtaacaccaccatatccatatgcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggct |
214 |
Q |
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| T |
1537971 |
agttgcttagaaatatttaggtaacaccacc------atatgcattcccatgatcttaacaaaga-cgaagcatcattgttttgcctctcatacgaggct |
1537879 |
T |
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| Q |
215 |
tgcggcaaggattgaaaggatcttgggct |
243 |
Q |
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| T |
1537878 |
tgcggcaaggattgaaaggatcttgggct |
1537850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 296 - 462
Target Start/End: Complemental strand, 1537830 - 1537663
Alignment:
| Q |
296 |
ttctgattgcaa-cgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
394 |
Q |
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| T |
1537830 |
ttctgattgcaaacgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
1537731 |
T |
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| Q |
395 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctt |
462 |
Q |
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| T |
1537730 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctt |
1537663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 46641786 - 46641851
Alignment:
| Q |
328 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
393 |
Q |
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| T |
46641786 |
tgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacatcacaag |
46641851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 46172995 - 46173079
Alignment:
| Q |
309 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
393 |
Q |
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| T |
46172995 |
gctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaag |
46173079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 46620412 - 46620350
Alignment:
| Q |
189 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggat |
251 |
Q |
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| T |
46620412 |
cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggat |
46620350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 46639130 - 46639067
Alignment:
| Q |
189 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggatg |
252 |
Q |
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| T |
46639130 |
cattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatg |
46639067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 46641619 - 46641701
Alignment:
| Q |
155 |
tgcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
238 |
Q |
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| T |
46641619 |
tgcattcccatgatctgaacaatgac-gacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
46641701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 393
Target Start/End: Complemental strand, 46630788 - 46630704
Alignment:
| Q |
309 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
393 |
Q |
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| T |
46630788 |
gctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcaggctgttgttccaacgaaccaacatcacaag |
46630704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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