View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19728_high_13 (Length: 228)
Name: NF19728_high_13
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19728_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 24300483 - 24300673
Alignment:
| Q |
17 |
caaaggggagtatatccttggaggaaaccaatttcaaatggcgaaaaagtttatcaaatttcaaaaggacttggaaacaagtacaaagaatttcaaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24300483 |
caaaggggagtatatccttggaggaaaccaatttcaaatggcgaaaaagtttttcaaatttcaaaaggacttggaaacaagtacaaagaatttcaaatgg |
24300582 |
T |
|
| Q |
117 |
cggttttataaaaacttttttgtaattgtatccttcctttgatcaatttattatgtcattgaaattcattgaaatagccttcctcggcctaca |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24300583 |
cggttttataaaaac--ttttgtaattgtatccttcctttgatcaatttattatgtcattgaaattcattgaaatagccttcctcggcctaca |
24300673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University