View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19728_high_3 (Length: 413)
Name: NF19728_high_3
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19728_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 35145563 - 35145878
Alignment:
| Q |
1 |
cgaacacatgaagaggtttcaactagggatggtctaagcttatcccagtggattttattccccacaatcctccaattcccactgcgtgtcctaaatgaaa |
100 |
Q |
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| T |
35145563 |
cgaacacatgaagaggtttcaactagggatggtctaagcttatcccagtggattttattccccacaatcctccaattcccactgcgtgtcctaaatgaaa |
35145662 |
T |
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| Q |
101 |
cacattttaatcacctccatataatcaaattattaaactcatataaaaccgttaatgtcatcacaaaatttaacttgttgaaagagaaaaaatattatga |
200 |
Q |
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| T |
35145663 |
cacattttaatcacctccatataatcaaattattaaactcatataaaaccgttaatgtcatcacaaaatttaacttgttgaaagagaaaaaatattatga |
35145762 |
T |
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| Q |
201 |
caatactagagtagtattttgtttaagagtgtgagtctacccgtatgtataccttgcttgaaaggtatcagttttggagtcatagctaagcaaggcctcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35145763 |
caatactagagtagtattttgtttaagagtgtgattccacccgtatgtataccttgcttgaaaggtatcagttttggagtcatagctaagcaaggcctcg |
35145862 |
T |
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| Q |
301 |
tgaacatatagtccct |
316 |
Q |
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| T |
35145863 |
tgaacatatagtccct |
35145878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 35145898 - 35145935
Alignment:
| Q |
363 |
ctcgttttaagaattttgatatgactccggagaataat |
400 |
Q |
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| T |
35145898 |
ctcgttttaagaattttgatatgactccggagaataat |
35145935 |
T |
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