View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19728_high_7 (Length: 343)

Name: NF19728_high_7
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19728_high_7
NF19728_high_7
[»] chr2 (23 HSPs)
chr2 (1-328)||(39192232-39192560)
chr2 (1-328)||(39197912-39198240)
chr2 (1-238)||(39222808-39223045)
chr2 (114-328)||(39161920-39162134)
chr2 (114-328)||(39207060-39207274)
chr2 (125-328)||(39388885-39389091)
chr2 (1-122)||(39215555-39215676)
chr2 (125-294)||(39215721-39215888)
chr2 (1-129)||(39389129-39389257)
chr2 (235-326)||(39223101-39223192)
chr2 (1-122)||(39161765-39161886)
chr2 (1-122)||(39207308-39207429)
chr2 (147-320)||(39370240-39370417)
chr2 (138-293)||(39381275-39381431)
chr2 (142-238)||(39421652-39421748)
chr2 (3-117)||(39370033-39370147)
chr2 (44-123)||(39381509-39381588)
chr2 (46-121)||(39459220-39459295)
chr2 (8-121)||(39473409-39473522)
chr2 (1-92)||(39137805-39137896)
chr2 (6-121)||(39421832-39421947)
chr2 (260-311)||(39426307-39426358)
chr2 (142-182)||(39473285-39473325)
[»] chr5 (2 HSPs)
chr5 (141-317)||(33561119-33561301)
chr5 (23-122)||(33560959-33561058)
[»] chr8 (1 HSPs)
chr8 (144-325)||(45342158-45342343)
[»] chr6 (2 HSPs)
chr6 (9-118)||(16113230-16113339)
chr6 (139-210)||(16113423-16113494)
[»] chr7 (1 HSPs)
chr7 (142-251)||(19807947-19808057)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 39192560 - 39192232
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39192560 caaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtt 39192461  T
Q  101 tgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39192460 tgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaattt 39192361  T
Q  201 cattgcaactattcctcttaatgatgatgatat-ttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattag 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39192360 cattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattag 39192261  T
Q  300 tcaatttgaaaagattttccagttttcat 328  Q
    |||||||||||||||||||||||||||||    
T  39192260 tcaatttgaaaagattttccagttttcat 39192232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 39198240 - 39197912
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39198240 caaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtt 39198141  T
Q  101 tgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39198140 tgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaattt 39198041  T
Q  201 cattgcaactattcctcttaatgatgatgatat-ttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattag 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39198040 cattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattag 39197941  T
Q  300 tcaatttgaaaagattttccagttttcat 328  Q
    |||||||||||||||||||| ||||||||    
T  39197940 tcaatttgaaaagattttcccgttttcat 39197912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 39222808 - 39223045
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    |||||||||||||||| |||| |||||||| | ||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||  |||    
T  39222808 caaaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtt 39222907  T
Q  101 tgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaattt 200  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  39222908 tgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaattt 39223007  T
Q  201 cattgcaactattcctcttaatgatgatgatattttta 238  Q
    | || ||||| |||||||||||||||||||||||||||    
T  39223008 ctttacaactgttcctcttaatgatgatgatattttta 39223045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 114 - 328
Target Start/End: Original strand, 39161920 - 39162134
Alignment:
Q  114 aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt 213  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||   ||||||||||||||| |||  |||| ||    
T  39161920 aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt 39162019  T
Q  214 cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag 312  Q
    ||| ||||||||||||||||||||  || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| ||||||||||    
T  39162020 ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag 39162118  T
Q  313 attttccagttttcat 328  Q
     |||||||| ||||||    
T  39162119 cttttccagatttcat 39162134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 114 - 328
Target Start/End: Complemental strand, 39207274 - 39207060
Alignment:
Q  114 aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt 213  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||   ||||||||||||||| |||  |||| ||    
T  39207274 aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt 39207175  T
Q  214 cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag 312  Q
    ||| ||||||||||||||||||||  || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| ||||||||||    
T  39207174 ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag 39207076  T
Q  313 attttccagttttcat 328  Q
     |||||||| ||||||    
T  39207075 cttttccagatttcat 39207060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 328
Target Start/End: Complemental strand, 39389091 - 39388885
Alignment:
Q  125 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga 224  Q
    |||||||||||| ||| |||||| |||||||||||| ||||||||| ||||||||||   ||||||||||||||||  || ||||| |||||||||||||    
T  39389091 gtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatga 39388992  T
Q  225 tgatgatat---ttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccag 321  Q
    |||||||||   ||||||| | |||||||||||||||  || |||| |||||||||||||||||||| |||||  |||||||||||||| | ||||||||    
T  39388991 tgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccag 39388892  T
Q  322 ttttcat 328  Q
     ||||||    
T  39388891 atttcat 39388885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39215555 - 39215676
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    |||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||| | |||  |||||| |||| |||||||| ||||||||    
T  39215555 caaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtt 39215654  T
Q  101 tgaaggactagtcaaggatcct 122  Q
    || ||||| |||||||||||||    
T  39215655 tggaggacaagtcaaggatcct 39215676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 39215721 - 39215888
Alignment:
Q  125 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga 224  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||||||| ||||| | ||||  |||||||||||||    
T  39215721 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 39215817  T
Q  225 tgatgata-tttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 294  Q
    |||||| | ||||||||||| ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39215818 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 39215888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 39389257 - 39389129
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    |||||||| ||| |||  || |||||||||  ||||| ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  39389257 caaaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtt 39389158  T
Q  101 tgaaggactagtcaaggatcctgcgtcaa 129  Q
    |||||| | |||||| ||||||| |||||    
T  39389157 tgaagggcaagtcaacgatcctgagtcaa 39389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 39223101 - 39223192
Alignment:
Q  235 tttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttc 326  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||| |||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttc 39223192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39161765 - 39161886
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    ||||| |||| ||||| |||||||| |||| |||||| |||   |||||| ||||| |||||| ||| | ||||||||||||||||||||||||||| ||    
T  39161765 caaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatt 39161864  T
Q  101 tgaaggactagtcaaggatcct 122  Q
    |||||||| |||||||||||||    
T  39161865 tgaaggacaagtcaaggatcct 39161886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 39207429 - 39207308
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtt 100  Q
    ||||| |||| ||||| |||||||| |||| |||||| |||   |||||| ||||| |||||| ||| | ||||||||||||||||||||||||||| ||    
T  39207429 caaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatt 39207330  T
Q  101 tgaaggactagtcaaggatcct 122  Q
    |||||||| |||||||||||||    
T  39207329 tgaaggacaagtcaaggatcct 39207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 320
Target Start/End: Original strand, 39370240 - 39370417
Alignment:
Q  147 gaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgata----tttttataac 242  Q
    ||||||||||| |  ||||||||| |||||||||||  ||||||||   |||||||||  || | |||| |||||||||||||||     ||||||||||    
T  39370240 gaggaaaaagatttgggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataac 39370339  T
Q  243 ctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcca 320  Q
    | ||||||  || |||| |||||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||||    
T  39370340 ccgatctatatagttctataaaaacattcttaatcatgttaatgttgtatgtcttggtcaatttaaaaagcttttcca 39370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 138 - 293
Target Start/End: Complemental strand, 39381431 - 39381275
Alignment:
Q  138 tatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt 237  Q
    |||||||| |||||  ||||||| ||||||||| ||||||||| |  |||| ||||||||||||||| ||  | || || ||||||||| ||||| ||||    
T  39381431 tatattgacgaggagcaagaatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatactttt 39381332  T
Q  238 a-taacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatg 293  Q
    | |||| |||||||| |||||| ||||||| |||||||||| |||||||||| ||||    
T  39381331 attaacttgatctacataattcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 39421748 - 39421652
Alignment:
Q  142 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttta 238  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||| ||||| || ||   ||||||| |||||||||||    
T  39421748 ttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattgaaagagtttcatttcaactgtttcttacaatgatgttgatattttta 39421652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 39370033 - 39370147
Alignment:
Q  3 aaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttg 102  Q
    ||||| |||||||| |||||||| ||||  |||||||||||||||||||| ||||||| ||   ||| ||||||| || | |||||||| ||||||||||    
T  39370033 aaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttg 39370132  T
Q  103 aaggactagtcaagg 117  Q
     | ||| ||||||||    
T  39370133 gaagacaagtcaagg 39370147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 39381588 - 39381509
Alignment:
Q  44 aaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctg 123  Q
    |||||||||| ||||||||| ||||  ||| |||||||| |||||||| |||||||||||| ||| || |||||||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcctg 39381509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  46 aagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcc 121  Q
    |||||||||||||||||| |   | ||| |||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  8 gaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaagga 107  Q
    ||||||||| |||| ||||||||  ||||| |||| |||||||||||||||||||| |   | ||||   ||||| |||||||| |||||| ||||||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  108 ctagtcaaggatcc 121  Q
      |||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39137805 - 39137896
Alignment:
Q  1 caaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaa 92  Q
    |||||||||||||| | |||| ||| ||||  ||||| |||| |||||||||||||||||||| |  ||  || |||||||| |||||||||    
T  39137805 caaaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaagaa 39137896  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  6 gagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaag 105  Q
    |||||| |||| |||| || |||||  |||||  ||| |||||||||||||||||||| |   | ||| |||||||| |||||||| ||||  |||| ||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  106 gactagtcaaggatcc 121  Q
     |||||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 39426358 - 39426307
Alignment:
Q  260 ttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaa 311  Q
    |||||||||| ||||||||||||||| || ||||| |||||||| |||||||    
T  39426358 ttaaaaacatgtttaatcatgttaatcttgtatgtcttagtcaacttgaaaa 39426307  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 39473325 - 39473285
Alignment:
Q  142 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatct 182  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  39473325 ttgatgaggaaatagaatcgggtaaatgttcttattcatct 39473285  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 317
Target Start/End: Original strand, 33561119 - 33561301
Alignment:
Q  141 attgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgat-attttt-- 237  Q
    |||||| ||||||||||||| ||||||||| ||| |||||||  |||||||||||||||| |||  || | ||||||| | |||||||||| ||||||      
T  33561119 attgataaggaaaaagaatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttg 33561218  T
Q  238 --ataacctgatctacttaattctttaaaaacatttttaatcatgttaatg-ttctatgtattagtcaatttgaaaagatttt 317  Q
      ||| ||||||||||||||| ||||||| ||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  33561219 ttatatcctgatctacttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagctttt 33561301  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 33560959 - 33561058
Alignment:
Q  23 acgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 122  Q
    |||||||| |||||| ||||  |||||| | |||||| | | ||||| ||||||||||| |||||||| |||||||| |||||||| || ||||||||||    
T  33560959 acgatggaatgaactggagtcgaaagagtacaagttcgatgaaaaggtgaaggagctcagcttaaaagtaaagcagtgtgaaggacaaggcaaggatcct 33561058  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 325
Target Start/End: Original strand, 45342158 - 45342343
Alignment:
Q  144 gatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataac 242  Q
    ||||||||||||||||  ||||||  |  ||||||||||  |||||||||||||||||||| |||||||| || ||  ||||| |||||||||| |||||    
T  45342158 gatgaggaaaaagaatttggtaaaatttgttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataac 45342257  T
Q  243 ctgatctacttaattctttaaaa---acatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagtttt 325  Q
    ||||||||| || |  |||||||   | || |||||| ||||||||||  ||| | |||||||| |||||||| || |||||||||    
T  45342258 ctgatctacatattcttttaaaaaatatatgtttaatgatgttaatgtagtatatcttagtcaagttgaaaagcttgtccagtttt 45342343  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  9 aagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggac 108  Q
    |||||||| |||| ||| ||||  ||||| || | |||||||||| ||||||||| ||||| |||||||||||| |||||||| |||||| |||||| ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  109 tagtcaagga 118  Q
     |||||||||    
T  16113330 aagtcaagga 16113339  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 16113423 - 16113494
Alignment:
Q  139 atattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaact 210  Q
    ||||||| |||||||||||||| ||||| ||| || ||||||||  |||||||||| || |||||| |||||    
T  16113423 atattgacgaggaaaaagaatcgggtaagtgttctcattcatctagtttattgaaaaaaattcatttcaact 16113494  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19807947 - 19808057
Alignment:
Q  142 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ata 240  Q
    ||||||||||||||| ||| |||||| || |||||||||||  ||||| ||| || ||||||| || || || || || |||||| |||||||||| |||    
T  19807947 ttgatgaggaaaaagcatcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaata 19808046  T
Q  241 acctgatctac 251  Q
    |||||||||||    
T  19808047 acctgatctac 19808057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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