View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19728_low_12 (Length: 238)

Name: NF19728_low_12
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19728_low_12
NF19728_low_12
[»] chr2 (17 HSPs)
chr2 (1-219)||(39192683-39192901)
chr2 (1-219)||(39198363-39198581)
chr2 (39-221)||(39389586-39389768)
chr2 (1-89)||(39221904-39221992)
chr2 (1-89)||(39222114-39222202)
chr2 (37-221)||(39221214-39221389)
chr2 (39-221)||(39390888-39391061)
chr2 (69-221)||(39390456-39390608)
chr2 (37-120)||(39136774-39136857)
chr2 (157-217)||(39222238-39222298)
chr2 (157-221)||(39390334-39390398)
chr2 (35-89)||(39415863-39415917)
chr2 (69-123)||(39458699-39458753)
chr2 (42-123)||(39222458-39222539)
chr2 (157-217)||(39222028-39222088)
chr2 (157-221)||(39451761-39451825)
chr2 (157-221)||(39603001-39603065)
[»] chr5 (2 HSPs)
chr5 (1-221)||(33560363-33560583)
chr5 (167-217)||(17059267-17059317)
[»] chr7 (1 HSPs)
chr7 (38-203)||(19807052-19807217)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39192683 - 39192901
Alignment:
Q  1 tttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgt 100  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39192683 tttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaattcct 39192782  T
Q  101 taacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaa 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  39192783 taacttgtcctatcaatggcctcacagtttattttagctccttcctcatgcctactatatgcttccttttagattccagctcctgcactcggccttccaa 39192882  T
Q  201 ttccttctcctttgattca 219  Q
    |||| |||| |||||||||    
T  39192883 ttccgtctcttttgattca 39192901  T

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Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39198363 - 39198581
Alignment:
Q  1 tttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgt 100  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39198363 tttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaattcct 39198462  T
Q  101 taacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaa 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  39198463 taacttgtcctatcaatggcctcacagttgattttagctccttcctcatgcctactatatgcttccttttagattccagctcctgcactcggccttccaa 39198562  T
Q  201 ttccttctcctttgattca 219  Q
    |||| |||| |||||||||    
T  39198563 ttccgtctcttttgattca 39198581  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 39389586 - 39389768
Alignment:
Q  39 ctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagc 138  Q
    |||||||||||| | |||||||| ||||| |||||||||||||||||| |||| |||||| | || |||| || ||||| |||||| | || |||| |||    
T  39389586 ctttttagattccacctccttcacttggccatcaagttgcttctctttggagtcaaattcctgaaattgtactttcaatagcctcaattttgatttgagc 39389685  T
Q  139 tccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    |||  | |||||||| | ||||||||| |||||||||||||||||| | || | |||||||||||||||||||||||||||||    
T  39389686 tccaccatcatgctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatg 39389768  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39221992 - 39221904
Alignment:
Q  1 tttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttaga 89  Q
    |||||||  ||||||||| ||||||  ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  39221992 tttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttaga 39221904  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39222202 - 39222114
Alignment:
Q  1 tttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttaga 89  Q
    |||||||  ||||||||| ||||||  ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  39222202 tttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttaga 39222114  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 39221389 - 39221214
Alignment:
Q  37 ttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaatttta 136  Q
    ||||||| |||||| |||||||||| ||||| |||||||||||||||||| |||| || ||| | ||| |||||| ||||||  ||||   || |||| |    
T  39221389 ttcttttgagattccagctccttcacttggccatcaagttgcttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttga 39221290  T
Q  137 gctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    |||||| | |||||||| | ||||||||| ||||||||||         ||| |||||||||| |||||||||||||||||||||    
T  39221289 gctcctccatcatgctttcgaaatgcttctttttagattc---------cacacggccttcaagttccttctcctttgattcatg 39221214  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 39390888 - 39391061
Alignment:
Q  39 ctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagc 138  Q
    |||||||||||| ||||| || | |||   ||||||||||||||||||||||| || ||| | ||||||| || |||| | ||||| | || |||| |||    
T  39390888 ctttttagattctagctctttaatttgatgatcaagttgcttctctttagagtcaagttcctcaacttgttctttcaaagacctcattcttgatttgagc 39390987  T
Q  139 tccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    |||| | |||||| | | ||||||||| ||||||||||         ||| |||||||||||||||||||||||| |||||||    
T  39390988 tcctccatcatgccttcgaaatgcttctttttagattc---------cacacggccttcaaattccttctcctttaattcatg 39391061  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 39390456 - 39390608
Alignment:
Q  69 atcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatg-cttactaaatgcttcct 167  Q
    ||||| ||||||||||||||| | || ||| |||||||||||| ||||| ||||| ||  |  ||| ||||||| || | || ||| | |||||||||||    
T  39390456 atcaaattgcttctctttagactcaagttccttaacttgtcctttcaattgcctctcttctgttttgagctcct-ccacttggctttcaaaatgcttcct 39390554  T
Q  168 tttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    |||||||||||| |||| || | |||||||||||||  |||| |||||||||||    
T  39390555 tttagattccagttccttcatttggccttcaaattctctctcttttgattcatg 39390608  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 39136857 - 39136774
Alignment:
Q  37 ttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggc 120  Q
    |||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||  || ||| |||| ||||||| ||||||||    
T  39136857 ttctttttagattccagctccttcacttggccattcagttgcttctctttagaggcaagttccttaatttgtcctttcaatggc 39136774  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 39222298 - 39222238
Alignment:
Q  157 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgatt 217  Q
    ||||||||||||||||||||||||| || | |  |||||||||||||| |||| |||||||    
T  39222298 aaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttgatt 39222238  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 39390334 - 39390398
Alignment:
Q  157 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    ||||||||||||||||||||||| |||| || | |||||||||||||  |||| |||||| ||||    
T  39390334 aaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatg 39390398  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 39415863 - 39415917
Alignment:
Q  35 gcttctttttagattcaagctccttcagttggctatcaagttgcttctctttaga 89  Q
    |||||||||||||||| || ||||| | ||||| ||| |||||||||||||||||    
T  39415863 gcttctttttagattccagttcctttacttggccatcgagttgcttctctttaga 39415917  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 39458753 - 39458699
Alignment:
Q  69 atcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctc 123  Q
    ||||||||||||||||||||| | || ||| |||||||||||| ||||| |||||    
T  39458753 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctc 39458699  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 39222539 - 39222458
Alignment:
Q  42 tttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctc 123  Q
    ||||||||||| |||||||| | ||| ||||| || |||||||||||| | || ||| ||||| |||||| ||||| |||||    
T  39222539 tttagattcaaactccttcactcggccatcaaatttcttctctttagactcaatttccttaacctgtcctttcaattgcctc 39222458  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 39222088 - 39222028
Alignment:
Q  157 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgatt 217  Q
    ||||||||||||||||||||||||| || | |  |||||||||||| | |||| |||||||    
T  39222088 aaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttgatt 39222028  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 39451825 - 39451761
Alignment:
Q  157 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    ||||||||| ||||||||||||| |||| ||||  ||||||||||||  || | |||||||||||    
T  39451825 aaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatg 39451761  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 39603065 - 39603001
Alignment:
Q  157 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttgattcatg 221  Q
    ||||||||| |||||||||||||||||  |||| |||||||||| ||  | || |||||||||||    
T  39603065 aaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatg 39603001  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33560583 - 33560363
Alignment:
Q  1 tttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgt 100  Q
    |||||||||||||||||  |||| |  |||||  | |||||||||||||| ||||||||||  || | ||||||||||||||||||||| | || ||| |    
T  33560583 tttgactcaaactccttaacttgtctttcaaagtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagttctt 33560484  T
Q  101 taacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaa 200  Q
     || |||| || |||| | ||||| | || |||| ||||||| |  ||||||| | |||||||||  |||| |||||| ||||| ||| | |||||||||    
T  33560483 gaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaa 33560384  T
Q  201 ttccttctcctttgattcatg 221  Q
    ||||||||||||||| |||||    
T  33560383 ttccttctcctttgactcatg 33560363  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 17059317 - 17059267
Alignment:
Q  167 ttttagattccagctcctgcactcggccttcaaattccttctcctttgatt 217  Q
    |||||||||||||||||| |||| |||||||||||||  |||| |||||||    
T  17059317 ttttagattccagctccttcactaggccttcaaattcactctcttttgatt 17059267  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 19807217 - 19807052
Alignment:
Q  38 tctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttag 137  Q
    ||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||  ||  || |||| ||||||| |||||||| ||| | ||   || ||    
T  19807217 tctttttagattccagctccttcacttggccattgagttgcttctctttagaggcaagctccttaagttgtcctttcaatggcatcaattttgtattgag 19807118  T
Q  138 ctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattc 203  Q
    ||||| |  |  ||||   |||||| ||  ||||||||||||||| | ||||||||||||||||||    
T  19807117 ctcctccacctcgcttttgaaatgcctctctttagattccagctcattcactcggccttcaaattc 19807052  T

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