View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19728_low_2 (Length: 460)

Name: NF19728_low_2
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19728_low_2
NF19728_low_2
[»] chr6 (18 HSPs)
chr6 (1-222)||(29449367-29449587)
chr6 (281-442)||(29449645-29449805)
chr6 (324-374)||(10335378-10335428)
chr6 (300-375)||(34057936-34058012)
chr6 (328-375)||(7038840-7038887)
chr6 (317-371)||(27661736-27661790)
chr6 (325-375)||(30537508-30537558)
chr6 (320-369)||(18803250-18803299)
chr6 (328-372)||(10157995-10158039)
chr6 (318-373)||(14707361-14707416)
chr6 (327-365)||(26650236-26650274)
chr6 (327-365)||(26756204-26756242)
chr6 (335-369)||(28783009-28783043)
chr6 (335-369)||(30781113-30781147)
chr6 (328-368)||(6284669-6284709)
chr6 (335-375)||(6751883-6751923)
chr6 (323-375)||(9617440-9617492)
chr6 (335-375)||(19369835-19369875)
[»] chr7 (16 HSPs)
chr7 (324-372)||(43160491-43160539)
chr7 (326-375)||(10893870-10893919)
chr7 (323-373)||(23720467-23720516)
chr7 (324-374)||(37775989-37776039)
chr7 (324-369)||(650526-650571)
chr7 (323-366)||(18750882-18750925)
chr7 (337-375)||(6824237-6824275)
chr7 (326-368)||(10893355-10893397)
chr7 (322-368)||(21238822-21238868)
chr7 (346-374)||(24674309-24674337)
chr7 (324-364)||(31753774-31753814)
chr7 (326-374)||(31837760-31837808)
chr7 (312-375)||(38957343-38957407)
chr7 (347-375)||(39107751-39107779)
chr7 (328-368)||(44172898-44172938)
chr7 (335-375)||(46179911-46179951)
[»] chr8 (14 HSPs)
chr8 (323-374)||(32691749-32691800)
chr8 (325-375)||(31681831-31681881)
chr8 (329-369)||(8917247-8917287)
chr8 (323-371)||(29096952-29097000)
chr8 (319-375)||(32144695-32144751)
chr8 (337-375)||(10002164-10002202)
chr8 (328-370)||(16994051-16994093)
chr8 (337-375)||(31548294-31548332)
chr8 (325-371)||(32696372-32696418)
chr8 (335-368)||(2723764-2723797)
chr8 (328-373)||(3508063-3508108)
chr8 (325-374)||(41686803-41686852)
chr8 (325-369)||(1586616-1586660)
chr8 (346-374)||(10356892-10356920)
[»] chr1 (14 HSPs)
chr1 (317-375)||(31667425-31667483)
chr1 (328-369)||(43609825-43609866)
chr1 (337-375)||(50195466-50195504)
chr1 (328-368)||(21057794-21057834)
chr1 (325-364)||(23605132-23605171)
chr1 (328-371)||(26462650-26462693)
chr1 (328-362)||(17080895-17080929)
chr1 (323-373)||(17166814-17166864)
chr1 (329-374)||(14332420-14332465)
chr1 (342-375)||(32587195-32587228)
chr1 (334-367)||(42392459-42392492)
chr1 (323-375)||(18556027-18556079)
chr1 (330-374)||(40158412-40158456)
chr1 (330-374)||(43942337-43942381)
[»] chr3 (9 HSPs)
chr3 (324-373)||(45382750-45382799)
chr3 (322-374)||(1502579-1502631)
chr3 (316-368)||(19750807-19750859)
chr3 (325-368)||(19323456-19323499)
chr3 (317-368)||(19730217-19730268)
chr3 (328-374)||(23271996-23272042)
chr3 (323-372)||(28576722-28576771)
chr3 (335-375)||(44427859-44427899)
chr3 (322-374)||(47542540-47542592)
[»] chr4 (11 HSPs)
chr4 (324-370)||(683059-683105)
chr4 (323-369)||(9988706-9988752)
chr4 (326-368)||(28890768-28890810)
chr4 (323-369)||(45615422-45615468)
chr4 (322-365)||(8457930-8457973)
chr4 (328-375)||(33950147-33950194)
chr4 (323-364)||(10164469-10164510)
chr4 (328-369)||(19262931-19262972)
chr4 (335-368)||(50299085-50299118)
chr4 (325-369)||(25400849-25400893)
chr4 (337-369)||(48433209-48433241)
[»] chr2 (10 HSPs)
chr2 (328-374)||(44605141-44605187)
chr2 (336-375)||(43591382-43591421)
chr2 (328-374)||(18622426-18622472)
chr2 (322-364)||(32843718-32843760)
chr2 (325-374)||(22131256-22131305)
chr2 (319-368)||(29947150-29947199)
chr2 (338-375)||(39621495-39621532)
chr2 (335-375)||(18512143-18512183)
chr2 (318-374)||(39459785-39459841)
chr2 (335-375)||(43586006-43586046)
[»] chr5 (9 HSPs)
chr5 (318-374)||(28452585-28452641)
chr5 (327-365)||(645342-645380)
chr5 (328-374)||(32932234-32932280)
chr5 (323-368)||(7512205-7512250)
chr5 (335-372)||(27239563-27239600)
chr5 (325-366)||(28136673-28136714)
chr5 (335-375)||(10009844-10009884)
chr5 (326-374)||(25393927-25393975)
chr5 (343-375)||(29200800-29200832)
[»] scaffold0011 (1 HSPs)
scaffold0011 (328-375)||(240022-240069)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29449367 - 29449587
Alignment:
Q  1 caaatttggcgatgattttacaccatcctcataaaaaaccctaaatagatnnnnnnnnnntggaaaagaatcattgaacattaatgaaaagtaagaagca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  29449367 caaatttggagatgattttacaccatcctcataaaaaaccctaaatagacaaaaaaaaaa-ggaaaagaatcattgaacattaatgaaaagtaagaagca 29449465  T
Q  101 aaacctttaaatgagtctcaaaaacaatctcaacagcaacatcaagtaaacttttcaataaaacccgagctctctcaaccacctacaagaagcaaaatca 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449466 aaacctttaaatgagtttcaaaaacaatctcaacagcaacatcaagtaaacttttcaataaaacccgagctctctcaaccacctacaagaagcaaaatca 29449565  T
Q  201 aaaaacatgaatgacattcatg 222  Q
    ||||||||||||||||||||||    
T  29449566 aaaaacatgaatgacattcatg 29449587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 281 - 442
Target Start/End: Original strand, 29449645 - 29449805
Alignment:
Q  281 gcatgtactacgaagcaccgacacatacacgaaacaaacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtccttta 380  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29449645 gcatatactactaagcaccaacacatacacgaaacaaacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtc-gtgtccttta 29449743  T
Q  381 cacaaagacatatgtccgacactctaacactagacacagttttgatcaaaagtgtcggtgct 442  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29449744 cacaaagacatatgtccgacactcgaacactagacacagttttgatcaaaagtgtcggtgct 29449805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 10335428 - 10335378
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  10335428 gtagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 34057936 - 34058012
Alignment:
Q  300 gacacatacacgaa-acaaacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||||| | ||||||| |  ||||||| | ||||||| |||||||||| ||||||||||||||||||||||    
T  34057936 gacacatacacggacacaaacactaatagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtc 34058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 7038840 - 7038887
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  7038840 taatttcataaaataacaaaattgattgtaatcacatgtgtcggtgtc 7038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 27661736 - 27661790
Alignment:
Q  317 aacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcgg 371  Q
    ||||||| ||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  27661736 aacattgatagtaatttaagaaaataatatatttcaatgtaatcacatgtgtcgg 27661790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 30537508 - 30537558
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatcagatgtgtcagtgtc 30537558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 18803250 - 18803299
Alignment:
Q  320 attggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||| | |||| ||||||| |||||||||||||||||||||||||||    
T  18803250 attggtaattatttgagaaaattacataattgaatgtaatcacatgtgtc 18803299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggt 372  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 14707416 - 14707361
Alignment:
Q  318 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtg 373  Q
    ||||||| |||||||| ||||||| ||| ||||||| |||| ||||||||||||||    
T  14707416 acattggcagtaatttgagaaaatgacaaaattgaacgtaaacacatgtgtcggtg 14707361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 26650274 - 26650236
Alignment:
Q  327 gtaatttcagaaaataacataattgaatgtaatcacatg 365  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacatg 26650236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 26756242 - 26756204
Alignment:
Q  327 gtaatttcagaaaataacataattgaatgtaatcacatg 365  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacatg 26756204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 28783043 - 28783009
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||||||||| |||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacatgtgtc 28783009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 30781147 - 30781113
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtc 369  Q
    |||||||||||||||||||||||||| ||||||||    
T  30781147 agaaaataacataattgaatgtaatcgcatgtgtc 30781113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 6284709 - 6284669
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  6284709 taatttgagaaaatgacataattgaatttaatcacatgtgt 6284669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 6751923 - 6751883
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||| |||||||| |||||||||||| |||||||||||    
T  6751923 agaaaatgacataattcaatgtaatcacaagtgtcggtgtc 6751883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 9617440 - 9617492
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||| |||||| ||||||| |||||||| |||||||| | |||||||||||||    
T  9617440 ggtaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 19369835 - 19369875
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||| |||||||| |||||||||||| |||||||||||    
T  19369835 agaaaatgacataattcaatgtaatcacaagtgtcggtgtc 19369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 43160491 - 43160539
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggt 372  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 10893919 - 10893870
Alignment:
Q  326 agtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 23720467 - 23720516
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtg 373  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  23720467 ggtagtaatttaagaaaa-atcataattgaatgtaatcacatgtgtcggtg 23720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 37775989 - 37776039
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  37775989 gtagtaatttgagaaaatgacataattaaatgtaatcacatgtgtcagtgt 37776039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 650526 - 650571
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||||    
T  650526 gtagtaatttaagaaaatgacataattgaatgcaatcacatgtgtc 650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 18750882 - 18750925
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgt 366  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||    
T  18750882 ggtaataatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 6824237 - 6824275
Alignment:
Q  337 aaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  6824237 aaaatgacataattgaatgtaatcacatgtgtcgatgtc 6824275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 10893397 - 10893355
Alignment:
Q  326 agtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||| ||||||| |||||||||||||||||| |||||||    
T  10893397 agtaatttgagaaaatgacataattgaatgtaatcgcatgtgt 10893355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 21238822 - 21238868
Alignment:
Q  322 tggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||||||| |||||||  || ||||||||||||||||||||||    
T  21238822 tggtagtaatttaagaaaatgtcaaaattgaatgtaatcacatgtgt 21238868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 24674309 - 24674337
Alignment:
Q  346 taattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||||||||||||||||||||||||    
T  24674309 taattgaatgtaatcacatgtgtcggtgt 24674337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 31753814 - 31753774
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacat 364  Q
    |||||||||| ||||||| | ||||||||||||||||||||    
T  31753814 gtagtaatttgagaaaattaaataattgaatgtaatcacat 31753774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 31837760 - 31837808
Alignment:
Q  326 agtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||| ||||||| | |||||||||||||||| ||||||| |||||    
T  31837760 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 31837808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 38957407 - 38957343
Alignment:
Q  312 aaacaaacattggtagtaatttcagaaaa-taacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||||| ||||  |||||| |||||| |||  |||||||||||||||||||||||| |||||    
T  38957407 aaacaaacactggtgataatttgagaaaaataaattaattgaatgtaatcacatgtgtcagtgtc 38957343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 39107779 - 39107751
Alignment:
Q  347 aattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||||||||||||||||||||||    
T  39107779 aattgaatgtaatcacatgtgtcggtgtc 39107751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 44172938 - 44172898
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  44172938 taatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 46179951 - 46179911
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  46179951 agaaaataaattaattgaatataatcacatgtgtcggtgtc 46179911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 32691749 - 32691800
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  32691749 ggtagtaatttaagaaaatgacataattgaatgtaatcacatgtgtcagtgt 32691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 31681881 - 31681831
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtc 31681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 8917287 - 8917247
Alignment:
Q  329 aatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  8917287 aatttgagaaaataacataattgaatgtaatcagatgtgtc 8917247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 29096952 - 29097000
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcgg 371  Q
    |||| |||||| |||||||||  ||||||||||||||||||||||||||    
T  29096952 ggtaataatttaagaaaataaattaattgaatgtaatcacatgtgtcgg 29097000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 32144751 - 32144695
Alignment:
Q  319 cattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||| |||||| ||||||||  ||| || ||||||||||||||||||||||||    
T  32144751 cattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtc 32144695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 10002202 - 10002164
Alignment:
Q  337 aaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  10002202 aaaatgacataatttaatgtaatcacatgtgtcggtgtc 10002164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 16994051 - 16994093
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcg 370  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||    
T  16994051 taatttgagaaaatgacagaattgaatgtaatcacatgtgtcg 16994093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 31548332 - 31548294
Alignment:
Q  337 aaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  31548332 aaaatgacataattcaatgtaatcacatgtgtcggtgtc 31548294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 32696372 - 32696418
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcgg 371  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||||    
T  32696372 tagtactttcagaaaatgacataattgaacataatcacatgtgtcgg 32696418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 2723797 - 2723764
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||||||||||||||||||| |||||||||    
T  2723797 agaaaataacataattgaatgtaagcacatgtgt 2723764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 3508063 - 3508108
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtg 373  Q
    |||||| |||||||||||||||| |||||||||| |||||| ||||    
T  3508063 taatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 41686852 - 41686803
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||||||| ||||||||||||| |||| | ||||||||||||| |||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtgt 41686803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 1586616 - 1586660
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||||| | ||||| ||||||||||| |||||||||||||||    
T  1586616 tagtaatttgaaaaaatgacataattgaacgtaatcacatgtgtc 1586660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 10356892 - 10356920
Alignment:
Q  346 taattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||||||||||||||||||||||||    
T  10356892 taattgaatgtaatcacatgtgtcggtgt 10356920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 31667425 - 31667483
Alignment:
Q  317 aacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  31667425 aacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtc 31667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 43609866 - 43609825
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 50195504 - 50195466
Alignment:
Q  337 aaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  50195504 aaaatgacataattgaatgtaatcacatgtgtcggtgtc 50195466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 21057794 - 21057834
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  21057794 taattttagaaaataacataattgaatgtaatcgcatgtgt 21057834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 23605171 - 23605132
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacat 364  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  23605171 tagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 26462693 - 26462650
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcgg 371  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  26462693 taatttaagaaaatgaaataattgaatgtaatcacatgtgtcgg 26462650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 17080929 - 17080895
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcac 362  Q
    |||||| ||||||||||||||||||||||||||||    
T  17080929 taatttgagaaaataacataattgaatgtaatcac 17080895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 17166864 - 17166814
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtg 373  Q
    ||||||||||| | ||||| |||||||||||||||| ||||| ||||||||    
T  17166864 ggtagtaatttgacaaaatgacataattgaatgtaaccacatctgtcggtg 17166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 14332420 - 14332465
Alignment:
Q  329 aatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 32587195 - 32587228
Alignment:
Q  342 aacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||||||||||||||||||||| |||||    
T  32587195 aacataattgaatgtaatcacatgtgtcagtgtc 32587228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 367
Target Start/End: Complemental strand, 42392492 - 42392459
Alignment:
Q  334 cagaaaataacataattgaatgtaatcacatgtg 367  Q
    |||||||||||||||||||||||||||| |||||    
T  42392492 cagaaaataacataattgaatgtaatcagatgtg 42392459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 18556079 - 18556027
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||| |||||| | ||||| |||||||||| |||||||||||||||| |||||    
T  18556079 ggtaataatttaataaaatgacataattgactgtaatcacatgtgtcagtgtc 18556027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 40158456 - 40158412
Alignment:
Q  330 atttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgt 40158412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 43942337 - 43942381
Alignment:
Q  330 atttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||| |||||||||||||||| ||||||||||| |||| ||||||    
T  43942337 atttgagaaaataacataattcaatgtaatcacgtgtgacggtgt 43942381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 45382750 - 45382799
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtg 373  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  45382750 gtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtg 45382799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 1502579 - 1502631
Alignment:
Q  322 tggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||| |||| | ||||||| ||||||||||||||||||||||||||| ||||    
T  1502579 tggtaataatctaagaaaatgacataattgaatgtaatcacatgtgtctgtgt 1502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 19750859 - 19750807
Alignment:
Q  316 aaacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||| || |||||| ||||||| |||||||||||||| |||||||||||    
T  19750859 aaacattgttaataatttgagaaaatgacataattgaatgtgatcacatgtgt 19750807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 19323499 - 19323456
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  19323499 tagtaatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 19730268 - 19730217
Alignment:
Q  317 aacattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    ||||||| || |||||| ||||||| |||||||||||||| |||||||||||    
T  19730268 aacattgttaataatttgagaaaatgacataattgaatgtgatcacatgtgt 19730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 23272042 - 23271996
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||| ||||| | ||||||||||||||||||| ||||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgt 23271996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 28576722 - 28576771
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggt 372  Q
    |||| |||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  28576722 ggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggt 28576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 44427859 - 44427899
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||| |||||||  ||||||||||||||||||||||||    
T  44427859 agaaaatgacataatccaatgtaatcacatgtgtcggtgtc 44427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 47542540 - 47542592
Alignment:
Q  322 tggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||| |||||| ||||||| |  || ||||||||||||||||||||||||||    
T  47542540 tggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgt 47542592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 683059 - 683105
Alignment:
Q  324 gtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 370  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  683059 gtaggaatttgagaaaatgacataattgaatgtaatcacatgtgtcg 683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 9988752 - 9988706
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||    
T  9988752 ggtagttatttgagaaaatgacataattgaatgtaatcacatgtgtc 9988706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 28890768 - 28890810
Alignment:
Q  326 agtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacatgtgt 28890810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 45615468 - 45615422
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  45615468 ggtagtaatttaagaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 8457930 - 8457973
Alignment:
Q  322 tggtagtaatttcagaaaataacataattgaatgtaatcacatg 365  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||    
T  8457930 tggtaataatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 33950147 - 33950194
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||| ||||||| |||||||| |||||||||| |||||||||||||    
T  33950147 taatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtc 33950194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 10164469 - 10164510
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacat 364  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  10164469 ggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 19262972 - 19262931
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    |||||| |||| || |||||||||||||||||||||||||||    
T  19262972 taatttgagaagatgacataattgaatgtaatcacatgtgtc 19262931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 50299085 - 50299118
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgt 368  Q
    |||||||||||||||||||| |||||||||||||    
T  50299085 agaaaataacataattgaatataatcacatgtgt 50299118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 25400849 - 25400893
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  25400849 tagtaatttaagaaaatgacataattaaatgttatcacatgtgtc 25400893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 48433241 - 48433209
Alignment:
Q  337 aaaataacataattgaatgtaatcacatgtgtc 369  Q
    ||||||||||||||||||||||| |||||||||    
T  48433241 aaaataacataattgaatgtaattacatgtgtc 48433209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 44605187 - 44605141
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||    
T  44605187 taatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 43591382 - 43591421
Alignment:
Q  336 gaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  43591382 gaaaataacataattgaatgcaatcacatgtttcggtgtc 43591421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 18622426 - 18622472
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||| ||||||| |||||||| |||| ||||||||||||||||||    
T  18622426 taatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 32843718 - 32843760
Alignment:
Q  322 tggtagtaatttcagaaaataacataattgaatgtaatcacat 364  Q
    |||||||||| | ||||||| ||||||||||||||||||||||    
T  32843718 tggtagtaatatgagaaaatgacataattgaatgtaatcacat 32843760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 22131305 - 22131256
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||||||| ||||||| ||||  || |||||||||||||||||||||||    
T  22131305 tagtaatttgagaaaatgacattgttcaatgtaatcacatgtgtcggtgt 22131256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 29947199 - 29947150
Alignment:
Q  319 cattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    ||||||||||| ||  ||| ||| ||||||||||||||||||||||||||    
T  29947199 cattggtagtagttaaagagaattacataattgaatgtaatcacatgtgt 29947150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 39621532 - 39621495
Alignment:
Q  338 aaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  39621532 aaatcacataattgaatgtaatcacatgtgtcagtgtc 39621495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 18512183 - 18512143
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  18512183 agaaaataatataattcaatgtaatcacatgtgtcagtgtc 18512143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 39459785 - 39459841
Alignment:
Q  318 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    ||||||||| |||||| || |||| |  |||||||||||||||||| ||||||||||    
T  39459785 acattggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgtcggtgt 39459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 43586046 - 43586006
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||| |||||||| |||||||||||| |||||||||||    
T  43586046 agaaaatgacataattcaatgtaatcacaagtgtcggtgtc 43586006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 28452585 - 28452641
Alignment:
Q  318 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||||||| ||| ||||||||| |||||||||||| | ||||||||| |||||    
T  28452585 acattggtagtatttttagaaaataaaataattgaatgttaccacatgtgttggtgt 28452641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 645342 - 645380
Alignment:
Q  327 gtaatttcagaaaataacataattgaatgtaatcacatg 365  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 32932280 - 32932234
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  32932280 taattttagaaaataatataatccaatgtaatcacatgtgtcggtgt 32932234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 7512205 - 7512250
Alignment:
Q  323 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 368  Q
    ||||||||||| ||||||| |||| |||||||||||||| ||||||    
T  7512205 ggtagtaatttgagaaaatgacattattgaatgtaatcagatgtgt 7512250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 27239563 - 27239600
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggt 372  Q
    |||||||  |||||||||||||||||||||||||||||    
T  27239563 agaaaattgcataattgaatgtaatcacatgtgtcggt 27239600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 28136673 - 28136714
Alignment:
Q  325 tagtaatttcagaaaataacataattgaatgtaatcacatgt 366  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacatgt 28136714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 10009844 - 10009884
Alignment:
Q  335 agaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  10009844 agaaaatgacataattcaatgtaatcacatgtgtcgttgtc 10009884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 25393975 - 25393927
Alignment:
Q  326 agtaatttcagaaaataacataattgaatgtaatcacatgtgtcggtgt 374  Q
    |||||||| || |||  ||||| ||||||||||||||||||||||||||    
T  25393975 agtaatttaaggaaaatacatagttgaatgtaatcacatgtgtcggtgt 25393927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 29200832 - 29200800
Alignment:
Q  343 acataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||||||||||||||||||||||| ||||||    
T  29200832 acataattgaatgtaatcacatgtgttggtgtc 29200800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 240069 - 240022
Alignment:
Q  328 taatttcagaaaataacataattgaatgtaatcacatgtgtcggtgtc 375  Q
    |||||| ||||||||| |||||| |||||||||| |||||||||||||    
T  240069 taatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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