View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19728_low_5 (Length: 380)
Name: NF19728_low_5
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19728_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 156 - 370
Target Start/End: Complemental strand, 47077617 - 47077403
Alignment:
| Q |
156 |
tcagataggagaagggaaatgaaaaggctgcagtgaaggatatattaagctgaataggagaaggactatagaggagagtattacatcaacaacaacaagt |
255 |
Q |
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| T |
47077617 |
tcagataggggaagggaaatgaaaaggctgcagtgaaggatatattaagctgaataggagaaggactatagaggagagtattacatcaacaacaacaagt |
47077518 |
T |
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| Q |
256 |
acattattatcacattttttggaaaatgcgatcataagaatttaagtgtatgtaacttagtaagagtccaaacactactcagccacgtgaacggatattg |
355 |
Q |
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| T |
47077517 |
acattattatcacattttttggaaaatgcgatcataagaatttaagtgtatgtaaattagtaagagtccaaacactactcagccacgtgaacggatattg |
47077418 |
T |
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| Q |
356 |
cgggataagcctatg |
370 |
Q |
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| T |
47077417 |
cgggataagcctatg |
47077403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 47077759 - 47077649
Alignment:
| Q |
18 |
ttgaggaaatcattatcacaaagagctcaaatacaactatttccctcctggagcagtattgggcattgaattttcatagcgacagttcaataatgatgtg |
117 |
Q |
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| T |
47077759 |
ttgaggaaatcattatcacaaagagctcaaatacaactatttccctcctggagcagtattgggcattgaattttcatagcgacagttcaataatgatgtg |
47077660 |
T |
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| Q |
118 |
gaagactatga |
128 |
Q |
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| T |
47077659 |
gaagactatga |
47077649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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