View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19728_low_9 (Length: 304)

Name: NF19728_low_9
Description: NF19728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19728_low_9
NF19728_low_9
[»] chr2 (9 HSPs)
chr2 (86-292)||(3093383-3093589)
chr2 (96-225)||(28189700-28189830)
chr2 (95-225)||(8029683-8029814)
chr2 (84-225)||(20685872-20686013)
chr2 (84-225)||(19298244-19298386)
chr2 (84-225)||(40468765-40468911)
chr2 (74-144)||(10708363-10708435)
chr2 (74-145)||(12602341-12602415)
chr2 (74-145)||(8892808-8892882)
[»] chr1 (13 HSPs)
chr1 (84-292)||(52750394-52750605)
chr1 (94-235)||(24508446-24508590)
chr1 (84-225)||(36142355-36142497)
chr1 (84-225)||(47112334-47112476)
chr1 (74-145)||(31697347-31697420)
chr1 (126-225)||(49652666-49652758)
chr1 (84-141)||(24509217-24509275)
chr1 (74-131)||(50124366-50124425)
chr1 (94-145)||(968216-968268)
chr1 (94-141)||(29021827-29021875)
chr1 (94-141)||(52751326-52751374)
chr1 (83-141)||(968154-968213)
chr1 (96-143)||(968920-968968)
[»] chr3 (8 HSPs)
chr3 (84-292)||(33389413-33389623)
chr3 (94-235)||(52254515-52254659)
chr3 (84-225)||(32304945-32305087)
chr3 (84-225)||(42540875-42541017)
chr3 (84-213)||(34817571-34817701)
chr3 (121-225)||(17514402-17514506)
chr3 (74-141)||(54834164-54834233)
chr3 (84-141)||(52255283-52255341)
[»] chr6 (6 HSPs)
chr6 (94-235)||(901660-901802)
chr6 (84-225)||(12261165-12261307)
chr6 (84-225)||(16146320-16146462)
chr6 (84-225)||(27129084-27129226)
chr6 (84-222)||(20746300-20746440)
chr6 (94-141)||(902511-902559)
[»] chr7 (11 HSPs)
chr7 (94-235)||(17236300-17236444)
chr7 (87-222)||(8684963-8685099)
chr7 (84-225)||(17278641-17278783)
chr7 (74-141)||(14682749-14682818)
chr7 (74-141)||(30474922-30474991)
chr7 (84-168)||(30765909-30765994)
chr7 (87-144)||(25443245-25443304)
chr7 (88-143)||(18298070-18298126)
chr7 (84-141)||(17238394-17238452)
chr7 (185-225)||(30765989-30766029)
chr7 (74-145)||(18297386-18297459)
[»] chr8 (2 HSPs)
chr8 (84-225)||(13462347-13462489)
chr8 (126-181)||(9319070-9319125)
[»] chr5 (7 HSPs)
chr5 (84-225)||(6794456-6794598)
chr5 (96-225)||(23082793-23082922)
chr5 (118-225)||(22165857-22165964)
chr5 (74-141)||(38385102-38385171)
chr5 (74-141)||(13824397-13824467)
chr5 (74-141)||(24041971-24042041)
chr5 (84-123)||(38385577-38385617)
[»] chr4 (11 HSPs)
chr4 (94-235)||(50281916-50282060)
chr4 (114-235)||(13631094-13631215)
chr4 (84-225)||(9087010-9087153)
chr4 (126-225)||(40680734-40680833)
chr4 (94-192)||(44182799-44182899)
chr4 (74-141)||(45044604-45044673)
chr4 (84-141)||(44183576-44183634)
chr4 (84-141)||(50282688-50282746)
chr4 (84-141)||(13630332-13630390)
chr4 (84-145)||(26280314-26280376)
chr4 (84-123)||(45045065-45045105)
[»] scaffold0202 (1 HSPs)
scaffold0202 (84-225)||(21882-22024)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 3093383 - 3093589
Alignment:
Q  86 catcttcgtcaaatctataaacataataatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 185  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  3093383 catcttcatcaaatctataaacataataatttcataactcaatcaataaccaatttttccattaaaaaatatccctttcaatcaaaacaacacaatttat 3093482  T
Q  186 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcactactcgc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||| |    
T  3093483 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatccaaaactactctccaccatcacctgcgcactactcac 3093582  T
Q  286 ctttgct 292  Q
    |||||||    
T  3093583 ctttgct 3093589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 28189700 - 28189830
Alignment:
Q  96 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 194  Q
    |||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||||||||||||||    
T  28189700 aaatatataaacataatcaatttcataacttaatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccc 28189799  T
Q  195 taaaccaaatcaaccaaaatctttatatcta 225  Q
    |||| |||||||||||||||||| |||||||    
T  28189800 taaagcaaatcaaccaaaatcttcatatcta 28189830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 8029814 - 8029683
Alignment:
Q  95 caaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctcc 193  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| | ||||||||||||||||||||||    
T  8029814 caaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctatacaacacaatttctcaatctcc 8029715  T
Q  194 ctaaaccaaatcaaccaaaatctttatatcta 225  Q
     |||| |||||||||||||||||| |||||||    
T  8029714 ataaagcaaatcaaccaaaatcttcatatcta 8029683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 20685872 - 20686013
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  20685872 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 20685971  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||| ||||||| |||||||    
T  20685972 tctcaatctccctaaagcaaatcaacc-aaatcttcatatcta 20686013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 19298386 - 19298244
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||| ||| |||||||||| | ||||||||||||||||||  ||| | ||||||| ||||||||| | |||||||||||    
T  19298386 atcatcttcaacaaatatataaacaaaatcaatttcataatttaatcaataaccaattttttcattcataaacatctctttcaatctacacaacacaatt 19298287  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||| |||||| |||||||||||||||||| |||||||    
T  19298286 tctcaatcttcctaaaacaaatcaaccaaaatcttcatatcta 19298244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 40468911 - 40468765
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  40468911 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 40468812  T
Q  183 tctcaatctccc----taaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||||||    |||| |||||||||||||||||| |||||||    
T  40468811 tctcaatctccctaattaaagcaaatcaaccaaaatcttcatatcta 40468765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 10708363 - 10708435
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttc 144  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10708363 tctttttcatcataatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttc 10708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 12602415 - 12602341
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacat-aat-aatttcataactcaatcaataaccaatttttca 145  Q
    |||||||||| || |||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  12602415 tctttttcatcattatcttcatcaaatctataaacattaatcaatttcatatctcaatcaataaccaatttttca 12602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 8892882 - 8892808
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaatttttca 145  Q
    |||||||||| ||||||||| ||||||||||||||| |||| |||||| || ||| ||||||||| |||||||||    
T  8892882 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcgtatctccatcaataacaaatttttca 8892808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 84 - 292
Target Start/End: Original strand, 52750394 - 52750605
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaa-aacatccctttcaatcaaaacaacacaat 181  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  52750394 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttccattaaaaaaacatccctttcaatcaaaacaacacaat 52750493  T
Q  182 ttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa-nnnnnnnnaaatccaaaactactctccaccatgacctgcgcacta 280  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||  ||||| ||||||    
T  52750494 ttctcaatcttcctaaaccaaatcaaccaaaatctttatatctaatcactacaattttttttaaaatccaaaactactctccaccaccacctgggcacta 52750593  T
Q  281 ctcgcctttgct 292  Q
    ||| ||||||||    
T  52750594 ctcacctttgct 52750605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 24508446 - 24508590
Alignment:
Q  94 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 190  Q
    |||||||||||||||||  |   |||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  24508446 tcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaaaaacatccctttcaatctaaacaacacaatttctcaatc 24508545  T
Q  191 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 235  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  24508546 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 24508590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 36142355 - 36142497
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  36142355 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataatcaattttttgattcataaacatctctttcaatctaaacaacacaatt 36142454  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  36142455 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 36142497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 47112334 - 47112476
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  47112334 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 47112433  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||||||| || ||||||||||||||| || |||||||    
T  47112434 tctcaatctccctgaagcaaatcaaccaaaatattcatatcta 47112476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 31697347 - 31697420
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 145  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31697347 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcatatctcaatcaataaccaatttttca 31697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 49652666 - 49652758
Alignment:
Q  126 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||||| ||||||       ||||||||||||||||||||    
T  49652666 aatcaataaccaatttttccatttataaacatctctttcaatctaaacaacacaatttctcaatcttcctaaa-------aaccaaaatctttatatcta 49652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 24509275 - 24509217
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  24509275 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 24509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 50124425 - 50124366
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaa 131  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  50124425 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa 50124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 968216 - 968268
Alignment:
Q  94 tcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 145  Q
    |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  968216 tcaaatttataaacataatcaatttcatatcttaatcaataaccaatttttca 968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 29021827 - 29021875
Alignment:
Q  94 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  29021827 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 29021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 52751374 - 52751326
Alignment:
Q  94 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  52751374 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 52751326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 968154 - 968213
Alignment:
Q  83 tatcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||| || |||||| |||||||||||| ||||||||| || ||||||||||||||||    
T  968154 tatcatcatcatcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 968968 - 968920
Alignment:
Q  96 aaatctataaacat-aataatttcataactcaatcaataaccaattttt 143  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||||    
T  968968 aaatctataaacataaacaatttcatatctcaatcaatcaccaattttt 968920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 84 - 292
Target Start/End: Original strand, 33389413 - 33389623
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaata--accaatttttcaattaaaaaacatccctttcaatcaaaacaacacaa 180  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  || |||||||| ||||||| |||||||||||||||||||||||||||    
T  33389413 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaatataactaatttttccattaaaa-acatccctttcaatcaaaacaacacaa 33389511  T
Q  181 tttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcacta 280  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||  ||||||||||||    
T  33389512 tttttcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatcaaaaactactctccaccaccacctgcgcacta 33389611  T
Q  281 ctcgcctttgct 292  Q
    ||| ||||||||    
T  33389612 ctcacctttgct 33389623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 52254515 - 52254659
Alignment:
Q  94 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 190  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  52254515 tcaaatctataaacatataatccatttcataactcaatcaataaccaattgttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 52254614  T
Q  191 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 235  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  52254615 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 52254659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 32305087 - 32304945
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  32305087 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 32304988  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  32304987 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 32304945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 42541017 - 42540875
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||  ||||||||| |||||| ||||||    
T  42541017 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatttctttcaatctaaacaatacaatt 42540918  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  42540917 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 42540875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 34817571 - 34817701
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| |  |||||| ||| ||||| |||||||||||||    
T  34817571 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcatgaacatctcttccaatctaaacaacacaatt 34817670  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaa 213  Q
    |||||||||||||||| ||||||||||||||    
T  34817671 tctcaatctccctaaagcaaatcaaccaaaa 34817701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 17514506 - 17514402
Alignment:
Q  121 aactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttat 220  Q
    |||| ||||||||||||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  17514506 aacttaatcaataaccaatttttccattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 17514407  T
Q  221 atcta 225  Q
    |||||    
T  17514406 atcta 17514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 54834164 - 54834233
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  54834164 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 54834233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 52255341 - 52255283
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  52255341 atcatcttcatcatatctataaacataatcaatttcataactcaatcaacaaccaattt 52255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 901660 - 901802
Alignment:
Q  94 tcaaatctataaacataata-atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctc 192  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  901660 tcaaatctataaacataatctatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaacacaatttatcaatctc 901759  T
Q  193 cctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 235  Q
     |||||||||||||||||||||||| ||||||| |||||||||    
T  901760 tctaaaccaaatcaaccaaaatcttcatatctactcaccacaa 901802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 12261307 - 12261165
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  12261307 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 12261208  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  12261207 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 12261165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 16146320 - 16146462
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  16146320 atcatcttcaacaaatatataaacaaaatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 16146419  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  16146420 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 16146462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 27129084 - 27129226
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||| |||||||    
T  27129084 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacatcacaatt 27129183  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  27129184 tttcaatctccctaaagcaaatcaaccaaaatcttcatatcta 27129226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 20746440 - 20746300
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 181  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  20746440 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 20746341  T
Q  182 ttctcaatctccctaaaccaaatcaaccaaaatctttatat 222  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  20746340 ttctcaatcttcctaaagcaaatcaaccaaaatcttcatat 20746300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 902559 - 902511
Alignment:
Q  94 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  902559 tcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 902511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 17236300 - 17236444
Alignment:
Q  94 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 190  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  17236300 tcaaatctataaacatataatccatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 17236399  T
Q  191 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 235  Q
    |||||| |||||||||||||||||||| |||| || |||||||||    
T  17236400 tccctagaccaaatcaaccaaaatcttcatatatactcaccacaa 17236444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 8684963 - 8685099
Alignment:
Q  87 atcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 185  Q
    |||||| ||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||| ||||||||||||||||    
T  8684963 atcttcatcaaacctataaacataatcaattttataactcaatcaacaaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttct 8685062  T
Q  186 caatctccctaaaccaaatcaaccaaaatctttatat 222  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8685063 caatctccctaaaccaaatcaaccaaaatcttcatat 8685099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 17278641 - 17278783
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  17278641 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 17278740  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  17278741 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 17278783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 14682818 - 14682749
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  14682818 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 14682749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 30474991 - 30474922
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  30474991 tctttttcatcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 30474922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 30765909 - 30765994
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatc 168  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| |||||||||    
T  30765909 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatc 30765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 25443245 - 25443304
Alignment:
Q  87 atcttcgtcaaatctataaacataa--taatttcataactcaatcaataaccaatttttc 144  Q
    |||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  25443245 atcttcatcaaatctataaacataaattaatttcataactcaatctataaccaatttttc 25443304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 18298126 - 18298070
Alignment:
Q  88 tcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattttt 143  Q
    ||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  18298126 tcttcatcaaatctataaacataaacaatttcatatctcaatcaataaccaattttt 18298070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 17238452 - 17238394
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||| || ||||||    
T  17238452 atcatcttcagcaaatctataaacataatcaatttcataactcaatcaacaatcaattt 17238394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 30765989 - 30766029
Alignment:
Q  185 tcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  30765989 tcaatctccctaaagcaaatcaaccaaaatcttcatatcta 30766029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 18297386 - 18297459
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataataa-tttcataactcaatcaataaccaatttttca 145  Q
    |||||||||| | ||| ||| |||||| |||||||||||| | ||||||| || ||||||||||||||||||||    
T  18297386 tctttttcatcaccatgttcatcaaatttataaacataatgagtttcatatcttaatcaataaccaatttttca 18297459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 13462347 - 13462489
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  13462347 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 13462446  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  13462447 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 13462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 9319125 - 9319070
Alignment:
Q  126 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaat 181  Q
    ||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||    
T  9319125 aatcaataaccaattttttcattcaaaaacatccctttcaatctaaacaacacaat 9319070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 6794598 - 6794456
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  6794598 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 6794499  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  6794498 tctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 6794456  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 23082793 - 23082922
Alignment:
Q  96 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 194  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||| |||||    
T  23082793 aaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaa-ctccc 23082891  T
Q  195 taaaccaaatcaaccaaaatctttatatcta 225  Q
    |||| |||||||||||||||||| |||||||    
T  23082892 taaagcaaatcaaccaaaatcttcatatcta 23082922  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 22165964 - 22165857
Alignment:
Q  118 cataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctt 217  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||| |  ||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  22165964 cataactcaatcaataaccaattttccactaaaaaaacatcactttcatttcaaacaacacaaattctcaatctccataaatcaaatcaaccaaaatctt 22165865  T
Q  218 tatatcta 225  Q
     |||||||    
T  22165864 catatcta 22165857  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 38385102 - 38385171
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  38385102 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 38385171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 13824467 - 13824397
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  13824467 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 13824397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 24041971 - 24042041
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  24041971 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 24042041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 38385617 - 38385577
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataac 123  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  38385617 atcatcttcatcaaatctataaacataatcaatttcataac 38385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 50281916 - 50282060
Alignment:
Q  94 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 190  Q
    |||||||||||||||||  |   ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||||||||    
T  50281916 tcaaatctataaacatataatccatttcataactcaatcaataatcaatttttccattaaattacatccctttcaatctaaacaatacaatttctcaatc 50282015  T
Q  191 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 235  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  50282016 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 50282060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 13631215 - 13631094
Alignment:
Q  114 atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaa 213  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||    
T  13631215 atttcataacttaatcaataaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttatcaatctctctaaaccaaatcatccaaaa 13631116  T
Q  214 tctttatatctaatcaccacaa 235  Q
    |||| ||||||| |||||||||    
T  13631115 tcttcatatctactcaccacaa 13631094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 9087153 - 9087010
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 181  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  9087153 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 9087054  T
Q  182 ttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  9087053 ttctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 9087010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 40680734 - 40680833
Alignment:
Q  126 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    ||||||||| ||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  40680734 aatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 40680833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 44182799 - 44182899
Alignment:
Q  94 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 190  Q
    |||||||||||||||||  |   |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  44182799 tcaaatctataaacatataatccatttcataactcaatcaataacca-tttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 44182897  T
Q  191 tc 192  Q
    ||    
T  44182898 tc 44182899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 45044604 - 45044673
Alignment:
Q  74 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  45044604 tctttttcatcatcatcttcatcaaatatataaacataatcaatttcataactcaatcaataaccaattt 45044673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 44183634 - 44183576
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  44183634 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 44183576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 50282746 - 50282688
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  50282746 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 50282688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 13630332 - 13630390
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 141  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13630332 atcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 13630390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 26280314 - 26280376
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 145  Q
    ||||| ||| |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  26280314 atcatgttcatcaaatttataaacataatgaatttcatatcttaatcaataaccaatttttca 26280376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 45045105 - 45045065
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataac 123  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  45045105 atcatcttcatcaaatctataaacataatcaatttcataac 45045065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 22024 - 21882
Alignment:
Q  84 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 182  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||| |||||    
T  22024 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaactcaatt 21925  T
Q  183 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 225  Q
    |||||||||||||||| |||||||||||||| ||| |||||||    
T  21924 tctcaatctccctaaagcaaatcaaccaaaaccttcatatcta 21882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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