View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19729_high_2 (Length: 233)
Name: NF19729_high_2
Description: NF19729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19729_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4670102 - 4669892
Alignment:
| Q |
17 |
atatggtcggtaaattagagcttccaaaccaaaatcatccatatctatgcaaattacaatgacttaacaaagttagtgaagtgaaa---------tgttc |
107 |
Q |
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| T |
4670102 |
atatggtcgataaattagagcttccaaaccaaaatcatccatatctatgcaaattacaatgacttaacaaagttagtgaagtgaaagtcactaaatgttg |
4670003 |
T |
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| Q |
108 |
tctagtgagcttttcgactggtccaaaatatcaagatgcatatg-atgccattcctatctatgcatgacaccttgtactttgaagacttagacaatataa |
206 |
Q |
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| T |
4670002 |
tctagtgagcttttcgactagtccaaaatatcaagatacatatggatgccattcctatcgatgcatgacaccttgtactttgaagacttagacaatataa |
4669903 |
T |
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| Q |
207 |
ttgttgtgcct |
217 |
Q |
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| T |
4669902 |
ttgttgtgcct |
4669892 |
T |
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