View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19729_low_2 (Length: 339)
Name: NF19729_low_2
Description: NF19729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19729_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 34231584 - 34231894
Alignment:
| Q |
19 |
gaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34231584 |
gaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgg |
34231683 |
T |
|
| Q |
119 |
gatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
34231684 |
gatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgt |
34231783 |
T |
|
| Q |
219 |
tcatataataaattaagaggtccattgccgaataaaattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231784 |
tcatataataaattaagaggtccattgccaaataaaattacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattc |
34231883 |
T |
|
| Q |
319 |
cttcccctttg |
329 |
Q |
| |
|
||||| ||||| |
|
|
| T |
34231884 |
cttcctctttg |
34231894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 323
Target Start/End: Original strand, 34239357 - 34239640
Alignment:
| Q |
40 |
tttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
139 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||| ||||||| | ||| ||||||| |||||||||||||| |||||||||||||||||| | | |
|
|
| T |
34239357 |
tttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaagtatt |
34239456 |
T |
|
| Q |
140 |
ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggt |
239 |
Q |
| |
|
| |||| ||| ||||| |||| ||||||||||||| ||| |||||||| ||| |||||||||| ||||||||| | |||||||||||| ||| |
|
|
| T |
34239457 |
ctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataaattagagggt |
34239556 |
T |
|
| Q |
240 |
ccattgccgaataaaattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcc |
323 |
Q |
| |
|
||| | | ||||||||| ||||||||||| ||||| || |||| | |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
34239557 |
ccactacataataaaattgcaggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcc |
34239640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 42124823 - 42124625
Alignment:
| Q |
20 |
aggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcggg |
119 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| || |||||| ||||||||||| | |||||||| || ||||||| |||||||| ||||| ||| |
|
|
| T |
42124823 |
aggtgagctgccaacatcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaatcccagatgtgtttggtggg |
42124724 |
T |
|
| Q |
120 |
atgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgt |
218 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||||||| ||||||||||||| ||| ||||||| ||||||| ||| | | |||||||||| |
|
|
| T |
42124723 |
atgaccaaactgcaagaactcgatttaacttccaacaatttagaaggacaaattccatcttcactatttaacttgactcagcttttcacattagattgt |
42124625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 41712465 - 41712533
Alignment:
| Q |
70 |
atctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
139 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| |||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
41712465 |
atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact |
41712533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 41570789 - 41570876
Alignment:
| Q |
19 |
gaggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccaga |
106 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||| |||| || || || |||| ||||||||| || ||||||||||||| |
|
|
| T |
41570789 |
gaggtgatcttccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtggtcaaattccaga |
41570876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 42118378 - 42118326
Alignment:
| Q |
36 |
tcactttcaaaccttcgccatctcattaacttggatctttcatacaattcatt |
88 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||| | ||||||||| |
|
|
| T |
42118378 |
tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatt |
42118326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 12249777 - 12249584
Alignment:
| Q |
40 |
tttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
139 |
Q |
| |
|
|||||||||||| | ||||||| || |||||||||||| ||||||||| ||| ||||||| |||||||| ||| | | ||||||||||||||||||||| |
|
|
| T |
12249777 |
tttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaact |
12249678 |
T |
|
| Q |
140 |
ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaatta |
233 |
Q |
| |
|
| |||| ||||||||| ||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
12249677 |
caatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatta |
12249584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 25521812 - 25521972
Alignment:
| Q |
30 |
ccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaac |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||| ||||| || || || |||||||||||| |
|
|
| T |
25521812 |
ccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaat |
25521911 |
T |
|
| Q |
130 |
tgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaa |
190 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| |||||| |||||| ||| |||||||| |
|
|
| T |
25521912 |
tgcaagaactcgatctatattttaacaaattagaaggacagattccatcttcgttatttaa |
25521972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 11119377 - 11119138
Alignment:
| Q |
36 |
tcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaag |
135 |
Q |
| |
|
|||||||||||||||| || || ||| |||||||| |||| | |||| |||| ||| ||| ||| |||||||| ||||| |||||||| |||||||||| |
|
|
| T |
11119377 |
tcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaag |
11119278 |
T |
|
| Q |
136 |
aactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaag |
235 |
Q |
| |
|
||||| || ||| ||||| |||| ||||||||||||| || |||||||| |||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
11119277 |
aactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattaggttgttctaataataaattaga |
11119178 |
T |
|
| Q |
236 |
aggtccattgccgaataaaattacaggttttcaacagcta |
275 |
Q |
| |
|
||||| |||| || ||||||||||| || ||| ||||| |
|
|
| T |
11119177 |
tggtcccctgcccaacaaaattacagggttccaaaagcta |
11119138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 8524281 - 8524203
Alignment:
| Q |
20 |
aggtgaactaccaacatcactttcaaaccttcgccatctcattaacttggatctttcatacaattcattaagcagtcaa |
98 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
8524281 |
aggtgagcttccaacatcactatcaaaccttcgtcatctcatttacttggatgtttcatacaattcatttagcggtcaa |
8524203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 320
Target Start/End: Complemental strand, 8524190 - 8524053
Alignment:
| Q |
183 |
ttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgccgaataaaattacaggttttcaacagctagttcatt |
282 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| ||||| ||||| | ||| |
|
|
| T |
8524190 |
ttatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaactacaggtcttcaaaagctaactaatt |
8524091 |
T |
|
| Q |
283 |
ttcgtttaaatgacaaccgtctaaacggaacaattcct |
320 |
Q |
| |
|
| || |||||||||||| ||||| || ||||||||| |
|
|
| T |
8524090 |
tgcgattaaatgacaacttgctaaatggtacaattcct |
8524053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University