View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19729_low_5 (Length: 207)

Name: NF19729_low_5
Description: NF19729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19729_low_5
NF19729_low_5
[»] chr3 (26 HSPs)
chr3 (7-207)||(22458172-22458372)
chr3 (7-207)||(22481153-22481353)
chr3 (6-207)||(22357685-22357886)
chr3 (7-207)||(22367607-22367810)
chr3 (6-91)||(22436433-22436518)
chr3 (7-203)||(22442429-22442628)
chr3 (6-207)||(22635189-22635390)
chr3 (7-91)||(22430972-22431056)
chr3 (146-204)||(22430856-22430914)
chr3 (146-207)||(22436314-22436375)
chr3 (146-207)||(22467634-22467695)
chr3 (6-207)||(22630124-22630325)
chr3 (152-203)||(22180157-22180208)
chr3 (152-200)||(22115825-22115873)
chr3 (152-203)||(21937893-21937944)
chr3 (6-108)||(22353595-22353697)
chr3 (146-202)||(22353500-22353557)
chr3 (146-203)||(30988980-30989037)
chr3 (152-203)||(22028740-22028791)
chr3 (152-203)||(22035257-22035308)
chr3 (152-203)||(22053446-22053497)
chr3 (152-203)||(22105448-22105499)
chr3 (152-203)||(22187728-22187779)
chr3 (6-108)||(22467733-22467835)
chr3 (152-200)||(22614949-22614997)
chr3 (167-203)||(22656741-22656777)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 22458372 - 22458172
Alignment:
Q  7 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22458372 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaaatctaaatatagagt 22458273  T
Q  107 taaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctga 206  Q
    |||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458272 taaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctgtcttacaatctcaagtcatgtttgttgtattttggattatatcctga 22458173  T
Q  207 a 207  Q
    |    
T  22458172 a 22458172  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 22481353 - 22481153
Alignment:
Q  7 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22481353 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaaatctaaatatagagt 22481254  T
Q  107 taaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctga 206  Q
    |||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481253 taaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctgtcttacaatctcaagtcatgtttgttgtattttggattatatcctga 22481154  T
Q  207 a 207  Q
    |    
T  22481153 a 22481153  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 22357886 - 22357685
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagag 105  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||  |||||||| || | ||   |||||||||||||||||||||| | |||||  ||||    
T  22357886 aggattaccactagcaattgtagtcattggtggtattttagctcccaaagataaaattccaatggaatggtataagtttagtgaaaatataaatgcagag 22357787  T
Q  106 ttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctg 205  Q
    ||| | ||| |||  |  ||        || ||||  |  |||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||    
T  22357786 ttagaggaatattccataataagaaaaattttaggatttagttaccatgatttgccttactacctcaagtcatgtttcttgtattttggattatatcctg 22357687  T
Q  206 aa 207  Q
    ||    
T  22357686 aa 22357685  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 22367810 - 22367607
Alignment:
Q  7 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatag--- 103  Q
    ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| ||   ||||||| |||||||||||||| | |||||  ||       
T  22367810 ggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatggtctaagtttagtgaaaatataaatgcagatc 22367711  T
Q  104 agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    ||| ||| ||| |||  | |||        || |||| ||  |||||||||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||    
T  22367710 agtcaaaggaatattccatgataaaaaaaattctaggacttagttaccatgatttgccttgcaacctcaagtcatgtttcttgtactttggattatatcc 22367611  T
Q  204 tgaa 207  Q
    ||||    
T  22367610 tgaa 22367607  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 22436518 - 22436433
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaa 91  Q
    |||||| || |||||||||||| ||| ||||||| ||||||||||||||||||||||| |  | |||||||| |||||||||||||    
T  22436518 aggattacctctagcaattgtagtcactggtggtcttttatcttgcaaagatagaaatcctactgaatggtacaagtttagtgaaa 22436433  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 22442628 - 22442429
Alignment:
Q  7 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatag--- 103  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||   ||||||||| |||||| ||||| | |||||  ||       
T  22442628 ggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaatacaattgaatggtatgagtttaatgaaaatataaatgcagatc 22442529  T
Q  104 agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||| || ||| |||  |   |        || |||| ||| |||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  22442528 agtttaaggaatattccatagtaagaaaaattttaggactcagttaccatgatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcc 22442429  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 22635390 - 22635189
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagag 105  Q
    |||||| || |||||||||||| ||||||||| |||| ||||| |||  ||||||||| ||  ||||||||  ||||||||||||| | |||||  ||||    
T  22635390 aggattacctctagcaattgtagtcattggtgatattctatctcgcacggatagaaattcaatagaatggtcgaagtttagtgaaaatataaatgcagag 22635291  T
Q  106 ttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctg 205  Q
    ||| | ||| |||  | |||        || |||| ||  |||||||||||||| | | | | |||||||||||||| ||||||||||||||||||||||    
T  22635290 ttagaggaatattccatgataagaaaaattttaggacttagttaccatgatttgccatgctacctcaagtcatgtttcttgtattttggattatatcctg 22635191  T
Q  206 aa 207  Q
    ||    
T  22635190 aa 22635189  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 22431056 - 22430972
Alignment:
Q  7 ggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaa 91  Q
    ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| ||   ||||||| ||||||||||||||    
T  22431056 ggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatggtctaagtttagtgaaa 22430972  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 22430914 - 22430856
Alignment:
Q  146 gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcct 204  Q
    |||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||    
T  22430914 gttaccatgatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcct 22430856  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 22436375 - 22436314
Alignment:
Q  146 gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaa 207  Q
    |||||||||||||| ||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  22436375 gttaccatgatttgccttactacctcaagtcgtgtttcttgtattttggattatatcctgaa 22436314  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 22467695 - 22467634
Alignment:
Q  146 gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaa 207  Q
    |||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22467695 gttaccataatttaccttacaacctcaagtcatgtttcttgtattttggattatatcctgaa 22467634  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 22630325 - 22630124
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagag 105  Q
    |||||| || |||||||||||| |||  |||| |||||||||| |||||| ||||||| ||   ||||||| |||||||||||||| | ||||| |||||    
T  22630325 aggattacctctagcaattgtagtcaccggtgatattttatctcgcaaagttagaaatccaattgaatggtctaagtttagtgaaaatataaatgtagag 22630226  T
Q  106 ttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctg 205  Q
    ||| | ||| |||  |  ||         | ||||  |  |||||||||||||  ||||||| |||||||||||||| |||||||||||||| |||||||    
T  22630225 ttagaggaatattccacaataagaaaaaatttaggatttagttaccatgatttaccttacaacctcaagtcatgtttcttgtattttggattctatcctg 22630126  T
Q  206 aa 207  Q
    ||    
T  22630125 aa 22630124  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22180157 - 22180208
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  22180157 atgatttgccttactatctcaagtcatgtttgttgtattttggagtatatcc 22180208  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 22115825 - 22115873
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattata 200  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  22115825 atgatttgccttactatctcaagtcatgtttgttgtattttggagtata 22115873  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 21937893 - 21937944
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||| |||||||    
T  21937893 atgatttgccttactatctcaagtcatgcttgttgtattttggagtatatcc 21937944  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 22353697 - 22353595
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagag 105  Q
    |||||| || || ||||||||| |||| |||  |||||||||| |||||||||||||| ||   ||||||| |||||||||||||| | |||||  ||||    
T  22353697 aggattacctctcgcaattgtagtcataggtaatattttatctcgcaaagatagaaatccaattgaatggtctaagtttagtgaaaatataaatgcagag 22353598  T
Q  106 tta 108  Q
    |||    
T  22353597 tta 22353595  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 22353557 - 22353500
Alignment:
Q  146 gttaccatgatttgtctt-acaatctcaagtcatgtttgttgtattttggattatatc 202  Q
    |||||||||||||| ||| || | |||||||||||||| |||||||||||||||||||    
T  22353557 gttaccatgatttgcctttactacctcaagtcatgtttcttgtattttggattatatc 22353500  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 30989037 - 30988980
Alignment:
Q  146 gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    ||||| |||||||| |||||  |||||||||||| ||||||||||||||| |||||||    
T  30989037 gttacgatgatttgccttactctctcaagtcatgcttgttgtattttggaatatatcc 30988980  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22028740 - 22028791
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||    
T  22028740 atgatttgccttactatctcaagccatgcttgttgtattttggagtatatcc 22028791  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22035257 - 22035308
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||    
T  22035257 atgatttgccttactatctcaagccatgcttgttgtattttggagtatatcc 22035308  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22053446 - 22053497
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||| |||||||    
T  22053446 atgatttgccttactatctcgagtcatgcttgttgtattttggagtatatcc 22053497  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22105448 - 22105499
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||| |||||||    
T  22105448 atgatttgccttactatctcaagtcatgcttgttgtactttggagtatatcc 22105499  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 22187728 - 22187779
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||    
T  22187728 atgatttgccttactatctcaagccatgcttgttgtattttggagtatatcc 22187779  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 22467835 - 22467733
Alignment:
Q  6 aggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaaatatagag 105  Q
    |||||| || |||||||||||  |||  |||| |||||||||| ||||| |||||||| ||   ||||||| ||| |||||||||| | ||||| |||||    
T  22467835 aggattacctctagcaattgttgtcaccggtgatattttatctcgcaaaaatagaaatccaattgaatggtctaaatttagtgaaaatataaatgtagag 22467736  T
Q  106 tta 108  Q
    |||    
T  22467735 tta 22467733  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 22614997 - 22614949
Alignment:
Q  152 atgatttgtcttacaatctcaagtcatgtttgttgtattttggattata 200  Q
    |||||||| ||||| |||| |  ||||||||||||||||||||||||||    
T  22614997 atgatttgccttactatcttagatcatgtttgttgtattttggattata 22614949  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 22656777 - 22656741
Alignment:
Q  167 atctcaagtcatgtttgttgtattttggattatatcc 203  Q
    |||| |||||||||||||||||||||||| |||||||    
T  22656777 atcttaagtcatgtttgttgtattttggaatatatcc 22656741  T

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