View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1972_high_1 (Length: 480)

Name: NF1972_high_1
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1972_high_1
NF1972_high_1
[»] chr4 (16 HSPs)
chr4 (17-340)||(53121973-53122296)
chr4 (421-480)||(53121919-53121978)
chr4 (380-472)||(49863030-49863122)
chr4 (381-460)||(55957970-55958049)
chr4 (299-344)||(34968342-34968386)
chr4 (311-343)||(18004476-18004508)
chr4 (311-357)||(2228399-2228446)
chr4 (291-357)||(7967628-7967694)
chr4 (296-343)||(32923248-32923294)
chr4 (296-343)||(50380854-50380900)
chr4 (298-343)||(23673100-23673144)
chr4 (311-343)||(7190466-7190498)
chr4 (298-342)||(13984661-13984704)
chr4 (296-344)||(43179170-43179217)
chr4 (299-343)||(47704582-47704625)
chr4 (296-340)||(54151646-54151689)
[»] chr2 (11 HSPs)
chr2 (380-472)||(19315314-19315406)
chr2 (296-371)||(17736790-17736865)
chr2 (311-343)||(20644015-20644047)
chr2 (311-357)||(20517033-20517080)
chr2 (298-340)||(35727436-35727477)
chr2 (299-359)||(18324895-18324955)
chr2 (299-340)||(23250341-23250381)
chr2 (311-359)||(25274830-25274879)
chr2 (296-371)||(2256968-2257043)
chr2 (311-366)||(41668666-41668722)
chr2 (299-343)||(41682405-41682448)
[»] chr3 (16 HSPs)
chr3 (382-472)||(29400980-29401070)
chr3 (383-472)||(30058252-30058341)
chr3 (296-343)||(53633635-53633681)
chr3 (296-357)||(1757672-1757733)
chr3 (298-371)||(21245792-21245865)
chr3 (298-340)||(22486682-22486723)
chr3 (383-456)||(19340436-19340508)
chr3 (311-344)||(35208854-35208887)
chr3 (296-340)||(7868719-7868762)
chr3 (296-340)||(10843802-10843845)
chr3 (298-357)||(17588361-17588420)
chr3 (296-340)||(19939062-19939105)
chr3 (300-340)||(20222969-20223008)
chr3 (311-358)||(41151473-41151521)
chr3 (296-340)||(48315045-48315088)
chr3 (300-344)||(52543709-52543752)
[»] chr7 (8 HSPs)
chr7 (392-469)||(5780527-5780604)
chr7 (311-371)||(38553829-38553890)
chr7 (314-343)||(23374648-23374677)
chr7 (310-358)||(31885947-31885996)
chr7 (298-343)||(34000261-34000305)
chr7 (296-340)||(22690057-22690100)
chr7 (296-340)||(28012635-28012678)
chr7 (381-456)||(47241340-47241415)
[»] chr6 (5 HSPs)
chr6 (380-472)||(15572537-15572629)
chr6 (296-344)||(24438299-24438346)
chr6 (296-343)||(9311948-9311994)
chr6 (380-456)||(3005283-3005357)
chr6 (296-340)||(28951396-28951439)
[»] chr1 (15 HSPs)
chr1 (293-343)||(3573342-3573391)
chr1 (300-339)||(29059427-29059465)
chr1 (296-343)||(41182624-41182670)
chr1 (293-343)||(34083331-34083380)
chr1 (298-340)||(47719128-47719169)
chr1 (310-343)||(9413808-9413841)
chr1 (310-343)||(25271781-25271814)
chr1 (291-359)||(27853347-27853415)
chr1 (310-343)||(32826723-32826756)
chr1 (299-340)||(51067915-51067955)
chr1 (296-344)||(6094419-6094466)
chr1 (311-359)||(6645192-6645240)
chr1 (311-343)||(21015973-21016005)
chr1 (296-340)||(29800530-29800573)
chr1 (296-340)||(49875620-49875663)
[»] chr5 (8 HSPs)
chr5 (380-456)||(17816584-17816660)
chr5 (296-340)||(5107266-5107309)
chr5 (296-340)||(36623195-36623238)
chr5 (296-340)||(18589888-18589931)
chr5 (311-343)||(24438558-24438590)
chr5 (296-340)||(26034629-26034672)
chr5 (299-343)||(27651548-27651591)
chr5 (296-340)||(31198706-31198749)
[»] scaffold0027 (1 HSPs)
scaffold0027 (298-343)||(61588-61632)
[»] chr8 (10 HSPs)
chr8 (380-456)||(3887780-3887856)
chr8 (296-337)||(17806486-17806526)
chr8 (298-343)||(36919310-36919354)
chr8 (298-343)||(41625193-41625237)
chr8 (312-371)||(9192216-9192276)
chr8 (311-343)||(10320507-10320539)
chr8 (296-371)||(17704010-17704085)
chr8 (296-340)||(23816787-23816830)
chr8 (296-340)||(37999441-37999484)
chr8 (296-344)||(40316853-40316900)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 53122296 - 53121973
Alignment:
Q  17 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatcnnnnnnnn-attggagaaagacctacattgagaatttgagtttcataaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  53122296 atctccaataatatcaacgagagttttacaacaaggtgaacctgtatctttttttttattggagaaagacctacattgagaatttgagtttcataaaatt 53122197  T
Q  116 ttatttgatgagaaaccttgattaagctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatgcataaaaaagggaacaa 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53122196 ttatttgatgagaaaccttgattaggctacgataaaaattgaataaaacatttattttctttcttcaatcacaccaacgaatacataaaaaagggaacaa 53122097  T
Q  216 catttcatatcacaataatgtggattgtttaataatttgcataannnnnnnaccattagagcaaagggaaaatataggtactcgtgagcttaacttcagt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53122096 catttcatatcacaataatgtggattgtttaataatttgcataa-ttttttaccattagagcaaagggaaaatataggtactcgtgagcttagcttcagt 53121998  T
Q  316 tggtaagaataatgcataatatatg 340  Q
    || |||| | |||||||||||||||    
T  53121997 tgataaggacaatgcataatatatg 53121973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 53121978 - 53121919
Alignment:
Q  421 tatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgtacccacatt 480  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53121978 tatatgccctatgtaggagggtattttggtaatgtgtaactaagaatatgtacccacatt 53121919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 472
Target Start/End: Original strand, 49863030 - 49863122
Alignment:
Q  380 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 472  Q
    |||||||||||||||||||||| |||||||||||| |||| || | ||||||| |  ||||||| |||||||||||||||| || ||||||||    
T  49863030 gggaaaatatagatagacactcttttttcataccattcttgtacacaccctatatgagagggtattttggtaatgtgtaacaaaaaatatgta 49863122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 460
Target Start/End: Complemental strand, 55958049 - 55957970
Alignment:
Q  381 ggaaaatatagatagacactcctttttca-taccactcttctatataccctatgtaggagggtaatttggtaatgtgtaac 460  Q
    |||||||||||||||||| |||||||||  |||||||||| || | |||| |||| |||||||| ||||||||||||||||    
T  55958049 ggaaaatatagatagaca-tcctttttccgtaccactcttgtacacacccaatgtgggagggtattttggtaatgtgtaac 55957970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 34968342 - 34968386
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  34968342 gtgagcttaact-cagttggtaaaaataatgcataatatatgtaaa 34968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 18004476 - 18004508
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||||||||||||||||||||||    
T  18004476 tcagttggtaagaataatgcataatatatgtaa 18004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 2228446 - 2228399
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 357  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||    
T  2228446 tcagttagtaagaataatgcataatatatgtaaggtctgggattcgaa 2228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 7967694 - 7967628
Alignment:
Q  291 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa-tctgggattcgaa 357  Q
    |||| |||||||||||||||| |||| ||||  ||||||||||||||||| ||| |||||||||||||    
T  7967694 aggtcctcgtgagcttaactt-agttcgtaaagataatgcataatatatgcaaagtctgggattcgaa 7967628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 32923294 - 32923248
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  32923294 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatgtaa 32923248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 50380900 - 50380854
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  50380900 ctcgtgagcttaa-ttcagttggtatgaacaatgcataatatatgtaa 50380854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 23673100 - 23673144
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||    
T  23673100 cgtgagtttaact-cagttggtgagaataatgcataatatatgtaa 23673144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 7190498 - 7190466
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||| ||||||||||||||||||    
T  7190498 tcagttggtaagaacaatgcataatatatgtaa 7190466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 13984704 - 13984661
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgta 342  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||    
T  13984704 cgtgagcttaact-cagttggtaggaacaatgcataatatatgta 13984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 43179170 - 43179217
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    ||||||||||||  ||||||||||||| | |||||||||||||||||||    
T  43179170 ctcgtgagcttag-ttcagttggtaaggaaaatgcataatatatgtaaa 43179217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 47704582 - 47704625
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||    
T  47704582 gtgagcttaact-cagttggtatgaataatgtataatatatgtaa 47704625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 54151689 - 54151646
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  54151689 ctcgtgagcttaact-cagttggtaaggataatgtataatatatg 54151646  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 472
Target Start/End: Original strand, 19315314 - 19315406
Alignment:
Q  380 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 472  Q
    |||||||||||||||||||| | |||| |||||||||||| |||| ||| |||||  ||||||| |||||||||||||||| |||||||||||    
T  19315314 gggaaaatatagatagacaccctttttccataccactcttgtatacaccttatgtgagagggtattttggtaatgtgtaacaaagaatatgta 19315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 17736790 - 17736865
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 371  Q
    |||||||||||| || ||||||||| ||| ||||||||| |||||||| |||  |||||||||||||||||| ||||    
T  17736790 ctcgtgagcttagct-cagttggtatgaacaatgcataaaatatgtaagatcatggattcgaacctcggccaccaca 17736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 20644015 - 20644047
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||||||||||||||||||||||    
T  20644015 tcagttggtaagaataatgcataatatatgtaa 20644047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 20517033 - 20517080
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 357  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||    
T  20517033 tcagttggtaagaacaatgcataatatatgtaagttctgggattcgaa 20517080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 35727436 - 35727477
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  35727436 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 35727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 18324955 - 18324895
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 359  Q
    |||||||||||| ||||||||||| | ||||||||||||||| || |||| |||||||||||    
T  18324955 gtgagcttaact-cagttggtaaggacaatgcataatatatgcaagatctaggattcgaacc 18324895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 23250381 - 23250341
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  23250381 gtgagcttaact-cagttggtaagaacaatgcataatatatg 23250341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 25274879 - 25274830
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 359  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  25274879 tcagttggtaagaacaatgcataatatatgtaaggtctggggttcgaacc 25274830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 2256968 - 2257043
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 371  Q
    ||||||||||||||| ||||||||| | | ||||||||||||||| ||  |||||| |||||||| |||||| ||||    
T  2256968 ctcgtgagcttaact-cagttggtatggacaatgcataatatatgcaaggtctggggttcgaaccccggccaccaca 2257043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 41668666 - 41668722
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaaa-tctgggattcgaacctcggcca 366  Q
    |||||||||| ||| ||||||||||||||| ||| |||||  |||||||||||||||    
T  41668666 tcagttggtatgaacaatgcataatatatgcaaagtctggcgttcgaacctcggcca 41668722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 41682448 - 41682405
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||| |||||||||  |||||||||||||||||||||    
T  41682448 gtgagcttaact-cagttggtataaataatgcataatatatgtaa 41682405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 29400980 - 29401070
Alignment:
Q  382 gaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 472  Q
    ||||||||||||||||||   ||||||||||||||||| || | ||| |||||  ||||||| |||||||||||||||| ||| |||||||    
T  29400980 gaaaatatagatagacaccattttttcataccactcttgtacacaccgtatgtgtgagggtattttggtaatgtgtaacaaaggatatgta 29401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 472
Target Start/End: Original strand, 30058252 - 30058341
Alignment:
Q  383 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 472  Q
    |||||||||||| |||  | |||||||||||| |||| || | ||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  30058252 aaaatatagatatacatccttttttcataccaatcttatacacaccctatgtgggagggtattttggtaatgtgtaacaaaggatatgta 30058341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 53633681 - 53633635
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  53633681 ctcgtgagcttaact-cagttggtaaggataatgcataatatatgtaa 53633635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 1757733 - 1757672
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 357  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| ||  |||||||||||||    
T  1757733 ctcgtgagcttaact-cagttggtaggaacaatgcataatatatgcaacgtctgggattcgaa 1757672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 21245792 - 21245865
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 371  Q
    |||||||||| ||| |||||||||| | ||||||||||||||||||  |||||| ||| ||||||| ||||||||    
T  21245792 cgtgagcttagctt-agttggtaaggacaatgcataatatatgtaaggtctggggttcaaacctcgaccatcaca 21245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 22486682 - 22486723
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  22486682 cgtgagcttaact-cagttggtaagaacaatgcataatatatg 22486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 19340436 - 19340508
Alignment:
Q  383 aaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 456  Q
    |||||||||||| |||  | ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  19340436 aaaatatagataaacatccttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 19340508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 35208887 - 35208854
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaaa 344  Q
    ||||||||||||||||||| ||||||||||||||    
T  35208887 tcagttggtaagaataatgtataatatatgtaaa 35208854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 7868719 - 7868762
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| || ||||||||||||| |||||||||||||||    
T  7868719 ctcgtgagcttagct-cagttggtaagaacaatgcataatatatg 7868762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 10843845 - 10843802
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||    
T  10843845 ctcgtgagcttaact-cagttggtatgaataatacataatatatg 10843802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 17588361 - 17588420
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaa 357  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| || ||||||| ||||||    
T  17588361 cgtgagcttaact-cagttggtaaggacaatgcataatatatgcaagatctggggttcgaa 17588420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 19939105 - 19939062
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||    
T  19939105 ctcgtgagattaact-cagttggtaagaacaatgcataatatatg 19939062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 20223008 - 20222969
Alignment:
Q  300 tgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  20223008 tgagcttaactt-agttggtaagaacaatgcataatatatg 20222969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 41151473 - 41151521
Alignment:
Q  311 tcagttggtaagaataatgcataatatatg-taaatctgggattcgaac 358  Q
    ||||||||||| |||||| ||||||||||| |||||||||| |||||||    
T  41151473 tcagttggtaaaaataatacataatatatgttaaatctggggttcgaac 41151521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 48315088 - 48315045
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| || ||||||||||| |||||||||||||||||    
T  48315088 ctcgtgagcttagct-cagttggtaaggataatgcataatatatg 48315045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 52543752 - 52543709
Alignment:
Q  300 tgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||    
T  52543752 tgagcttaactt-agttggtaggaacaatgcataatatatgtaaa 52543709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 5780604 - 5780527
Alignment:
Q  392 atagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatat 469  Q
    |||||||||| ||||||||||||||||| |||| ||||||| | |||||||| || ||||||||||||| ||| ||||    
T  5780604 atagacactcttttttcataccactcttgtatacaccctatatgggagggtatttcggtaatgtgtaacaaaggatat 5780527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 38553829 - 38553890
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 371  Q
    |||||||||||||| ||||||||||||||||||  | |||| |||||||||||| |||||||    
T  38553829 tcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacctcggacatcaca 38553890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 343
Target Start/End: Complemental strand, 23374677 - 23374648
Alignment:
Q  314 gttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||||||||||||||||||    
T  23374677 gttggtaagaataatgcataatatatgtaa 23374648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 31885996 - 31885947
Alignment:
Q  310 ttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaac 358  Q
    ||||||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  31885996 ttcagttggtatgaacaatgcataatatatgtaagatctggaattcgaac 31885947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 34000261 - 34000305
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||    
T  34000261 cgtgagcttaact-cagttgataaggataatgcataatatatgtaa 34000305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 22690100 - 22690057
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| || |||||| ||||||||||||||||||||||    
T  22690100 ctcgtgagcttagct-cagttgctaagaataatgcataatatatg 22690057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 28012678 - 28012635
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||    
T  28012678 ctcgtgagcttaact-cagttggtaaggacaatgcataatatatg 28012635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 456
Target Start/End: Original strand, 47241340 - 47241415
Alignment:
Q  381 ggaaaatatagatagacactc-ctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 456  Q
    ||||||||||||||||||| |  ||||||||||||||||| |||| || | |||| ||||| || ||||||||||||    
T  47241340 ggaaaatatagatagacaccctttttttcataccactcttgtatacactc-atgtgggaggttattttggtaatgtg 47241415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 472
Target Start/End: Complemental strand, 15572629 - 15572537
Alignment:
Q  380 gggaaaatatagatagacactcctttttc-ataccactcttctatataccctatgtaggagggtaatttggtaatgtgtaactaagaatatgta 472  Q
    ||||||||||||||||||| ||||||||| ||||||||||| || | || |||||| ||||| || |||||||||||||||  ||| |||||||    
T  15572629 gggaaaatatagatagaca-tcctttttccataccactcttgtacacacactatgtgggaggatattttggtaatgtgtaataaaggatatgta 15572537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 24438346 - 24438299
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  24438346 ctcgtgaacttaact-cagttggtaagaataatgcataatatatgtaaa 24438299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 9311994 - 9311948
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  9311994 ctcgtgagcttaact-cagttggtatgaataatacataatatatgtaa 9311948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 3005357 - 3005283
Alignment:
Q  380 gggaaaatatagatagacactcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 456  Q
    ||||||||||| |||||||| | |||||||||| ||| || || ||||||  ||| |||||||| ||||||||||||    
T  3005357 gggaaaatataaatagacacccttttttcatactacttttgtacataccc--tgtgggagggtattttggtaatgtg 3005283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 28951396 - 28951439
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  28951396 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatg 28951439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 3573391 - 3573342
Alignment:
Q  293 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  3573391 gtactcgtgagcttaact-cagttggtaggaacaatgcataatatatgtaa 3573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 29059465 - 29059427
Alignment:
Q  300 tgagcttaacttcagttggtaagaataatgcataatatat 339  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29059465 tgagcttaa-ttcagttggtaagaataatgcataatatat 29059427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 41182670 - 41182624
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  41182670 ctcgtgagcttaact-cagttggtatgaataatgcataatatgtgtaa 41182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 34083331 - 34083380
Alignment:
Q  293 gtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  34083331 gtactcatgagcttaact-cagatggtaagaacaatgcataatatatgtaa 34083380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 47719169 - 47719128
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  47719169 cgtgagcttaact-cagttggtaaggataatgcataatatatg 47719128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 9413808 - 9413841
Alignment:
Q  310 ttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||||||||||||    
T  9413808 ttcagttggtaagaacaatgcataatatatgtaa 9413841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 25271814 - 25271781
Alignment:
Q  310 ttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||||| ||||||||||||||||||    
T  25271814 ttcagttggtaagaacaatgcataatatatgtaa 25271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 27853347 - 27853415
Alignment:
Q  291 aggtactcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacc 359  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||||||||||  || ||| ||||||||||||    
T  27853347 aggtcctcgtgagcttaact-cagttggtatgaacaatgcataatatatacaagatccgggattcgaacc 27853415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 32826756 - 32826723
Alignment:
Q  310 ttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||| |||||||||||||||||||||    
T  32826756 ttcagttggtaaaaataatgcataatatatgtaa 32826723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 51067955 - 51067915
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  51067955 gtgagcttaact-cagttggtaagaataatacataatatatg 51067915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 6094419 - 6094466
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||||||    
T  6094419 ctcgtgagcttaact-cagttggtatggataatgtataatatatgtaaa 6094466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 6645240 - 6645192
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaaatctgggattcgaacc 359  Q
    |||||||||||| | ||||||||| ||||| ||||||||| ||||||||    
T  6645240 tcagttggtaaggacaatgcataaaatatgcaaatctggggttcgaacc 6645192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 21015973 - 21016005
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||| ||||||||||||||||||    
T  21015973 tcagttggtaagaacaatgcataatatatgtaa 21016005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 29800530 - 29800573
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||    
T  29800530 ctcgtgagcttaact-cagttggtaaggataatgcataaaatatg 29800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 49875663 - 49875620
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||    
T  49875663 ctcgtgagcttaact-cagttggtaaggacaatgcataatatatg 49875620  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 17816584 - 17816660
Alignment:
Q  380 gggaaaatatagatagacactc-ctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 456  Q
    |||||||||||||||||||| |  |||||||||||||| || |||| |||| |||||||||| || ||||||||||||    
T  17816584 gggaaaatatagatagacaccctttttttcataccacttttgtatacaccc-atgtaggaggttattttggtaatgtg 17816660  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 5107309 - 5107266
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  5107309 ctcgtgagcttaact-cagttggtatgaataatgcataatatatg 5107266  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 36623238 - 36623195
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  36623238 ctcgtgagcttaact-cagttgataagaataatgcataatatatg 36623195  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 18589931 - 18589888
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  18589931 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatg 18589888  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 24438558 - 24438590
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||||||| ||||||||||||||||||    
T  24438558 tcagttggtaagaacaatgcataatatatgtaa 24438590  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 26034672 - 26034629
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  26034672 ctcgtgagcttaact-cagttggtatgaacaatgcataatatatg 26034629  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 27651591 - 27651548
Alignment:
Q  299 gtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||    
T  27651591 gtgagcttaactt-agttggtaaggacaatgcataatatatgtaa 27651548  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 31198706 - 31198749
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||    
T  31198706 ctcgtgatcttaact-cagttggtaaggataatgcataatatatg 31198749  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 61632 - 61588
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  61632 cgtgagcttaact-cagttggtaaggataatgcataatgtatgtaa 61588  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 3887856 - 3887780
Alignment:
Q  380 gggaaaatatagatagaca-ctcctttttcataccactcttctatataccctatgtaggagggtaatttggtaatgtg 456  Q
    ||||||||||||||||||| |   ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||    
T  3887856 gggaaaatatagatagacatcatttttttcataccactcttgtatacaccc-atgtgggaggttattttggtaatgtg 3887780  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 17806526 - 17806486
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatat 337  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  17806526 ctcgtgagattaact-cagttggtaagaataatgcataatat 17806486  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 36919310 - 36919354
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  36919310 cgtgagcttaact-cagttggtaagaacaatgtataatatatgtaa 36919354  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 41625193 - 41625237
Alignment:
Q  298 cgtgagcttaacttcagttggtaagaataatgcataatatatgtaa 343  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||    
T  41625193 cgtgagcttagct-cagttggtatgaataatgcataatatatgtaa 41625237  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 9192276 - 9192216
Alignment:
Q  312 cagttggtaagaataatgcataatatatgtaaa-tctgggattcgaacctcggccatcaca 371  Q
    ||||||||| ||| ||||||||||||||||||| |||||| ||| |||| |||||| ||||    
T  9192276 cagttggtatgaacaatgcataatatatgtaaagtctggggttcaaaccccggccaccaca 9192216  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 10320507 - 10320539
Alignment:
Q  311 tcagttggtaagaataatgcataatatatgtaa 343  Q
    ||||||| |||||||||||||||||||||||||    
T  10320507 tcagttgataagaataatgcataatatatgtaa 10320539  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 17704010 - 17704085
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaa-atctgggattcgaacctcggccatcaca 371  Q
    |||||||||||| || ||||||||||| | ||||||||||||||| ||  |||| ||||| ||||||||||| ||||    
T  17704010 ctcgtgagcttagct-cagttggtaaggacaatgcataatatatgcaaggtctgtgattcaaacctcggccaccaca 17704085  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 23816787 - 23816830
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    |||||||||||| || ||||||||||| |||||||||||||||||    
T  23816787 ctcgtgagcttagct-cagttggtaaggataatgcataatatatg 23816830  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 37999484 - 37999441
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatg 340  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||    
T  37999484 ctcgtgagcttaact-cagttggtatggataatgcataatatatg 37999441  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 40316853 - 40316900
Alignment:
Q  296 ctcgtgagcttaacttcagttggtaagaataatgcataatatatgtaaa 344  Q
    |||||||||||| || |||||| || |||||||||||||||||||||||    
T  40316853 ctcgtgagcttatct-cagttgatatgaataatgcataatatatgtaaa 40316900  T

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