View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_high_2 (Length: 404)
Name: NF1972_high_2
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 45306670 - 45307049
Alignment:
| Q |
17 |
agttcagtaataaacaaaactgtccatgtcctctctttctttctctctctttgtttgcctcttaggtataaccccttggtcattatgatggaatgactca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45306670 |
agttcagtaataaacaaaactgtccatgtcctctctttctttctctctctttgtttgcctcttaggtataaccccttggtcattatgatggaatgactca |
45306769 |
T |
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| Q |
117 |
attctcgagctagtgtgtgagactctgtcaccgctgatatagtagtggaatttgaaagctataattgattaattatttctagctttttgttgagtagagg |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45306770 |
attctcgagctagtgtgtgagactctgccaccgctgatatagtagtggaatttgaaagctataattgattaattatttctagctttttgttgagtagagg |
45306869 |
T |
|
| Q |
217 |
gcctactacctgcaaattctgaatccctactatttgtatgtctgttatttattattagtgcatgcaatgcaaaatatgtaatgagataagt-----aagt |
311 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45306870 |
gcctactaactgcaaattctgaatccctactatttgtatgtctgttatttattattagtgcatgcaatgcaaaatatgtaatgagataagtaagtaaagt |
45306969 |
T |
|
| Q |
312 |
accatgcaaattactaaaccacagcacagagcaatgtgtctattgtgtctgtgacccccctctctctaatattgattgtg |
391 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45306970 |
accatgcaaattactaaaccacagcacagagcaatgtgtctattgtgtctgtgacccccctctctctaatattgattgtg |
45307049 |
T |
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