View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_high_6 (Length: 345)
Name: NF1972_high_6
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 51418958 - 51418633
Alignment:
| Q |
16 |
aataataacgcatctacaa----ctacagtctacaggtaaggtaatcaacaacat---caggagctgcagaaatagagttgtttgtttgttatttgagct |
108 |
Q |
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| T |
51418958 |
aataataacgcatctacaaacaactacagtctacaggtaaggtaatcaacaacattaacaggagctgcagaaatagagttgtttgtttgttatttgagct |
51418859 |
T |
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| Q |
109 |
tcaatatgattcacctgccacatgcatgcacatgatgttttacctgctgggtcaaacacaacacaacatgtgacacatcaccattaatagtgataatgat |
208 |
Q |
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| T |
51418858 |
tcaatatgattcacctgccacatgcatgcacatgatgttttacctactgggtcaaacacaacacaacatgtgacacatcaccattaatagtgataatgat |
51418759 |
T |
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| Q |
209 |
gatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttggtccacctcaaacacctcctcaaccgtctccctttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51418758 |
gatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttgatccacctcaaacacctcctcaaccgtctccctttt |
51418659 |
T |
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| Q |
309 |
cgtcatcttcacgcgcctcccttcat |
334 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51418658 |
cgtcatcttcacgcgcctcccttcat |
51418633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 51413716 - 51413645
Alignment:
| Q |
204 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgcttggtc |
275 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || ||||| ||||| |
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| T |
51413716 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtc |
51413645 |
T |
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