View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_high_7 (Length: 327)
Name: NF1972_high_7
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 2879081 - 2879382
Alignment:
| Q |
1 |
tctggagggtattcatatgctgctctcgcatatgaccctgcagaatcttggtttttcaagattgcgcgttttcagggtcttcgtcatgtgaacattttct |
100 |
Q |
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| T |
2879081 |
tctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagattgtgcgttttcagggtcttcgtcatgtgaacattttct |
2879180 |
T |
|
| Q |
101 |
cctccgtgactggtaattggactacattgaatattagtttgccagaatacatttacgagtctgattggatnnnnnnntcaatttattttaaagggtctat |
200 |
Q |
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| T |
2879181 |
cctccgtgactggtaattggacgacattgaatattagtttgccagattacatttacgagtctgattggataaaaaaatcaatttattttaaagggtctat |
2879280 |
T |
|
| Q |
201 |
ttatcggctcaccaaatcggggtatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctgattgt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2879281 |
ttatcggctcaccaagtcggggtatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
2879381 |
at |
2879382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 2090031 - 2089954
Alignment:
| Q |
223 |
tatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctgattgt |
300 |
Q |
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| T |
2090031 |
tatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgt |
2089954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 2090246 - 2090153
Alignment:
| Q |
11 |
attcatatgctgctctcgcatatgaccctgcagaatcttggtttttcaagattgcgcgttttcagggtcttcgtcatgtgaacattttctcctc |
104 |
Q |
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|||||||||||||||| | |||||||||| ||||||||||||| |||||||||| | |||||||| || | | ||| | || ||||||||||| |
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| T |
2090246 |
attcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccatattaatattttctcctc |
2090153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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